Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0194 ATGGAAGCTGAGGAGGGAAGTAGCAACGGTGATAACGGTGAAGGGGTTGGGTTGGATTGGAGGTTGGGTTCTCAAGATGGAGATAATGGGGGGAGAATTTTAGGTGGAAATGGTGTTGCGGAGGGCGAAGGAGATCGGGGCTTGAAAGATGGAGCTGTAAATAATGGGGTGGCAATTGAAGCTGAAGAAGTTTGGGGTCTGAAGAAGGAAGCTGTAGATAATGGGGTGGCAGTTGTAGGAGGAGATGGTGTTGTAGAAGGTGAAGAAGTTCGGGGCTTGAAGAATGTAACTGTAAATAATGGGATGGCAATTGAGGGTGGAAATGGTGTTGCTGAAGGCAAAGTTTGGGCCTTGAAGAATGAAGTTATAAATAGTGGAGTGGCAATTGCTGATGGGAATGGTGCTGCTGAAGATGGAGAGGTTTCAGGCTCAAAGAATGATGTTATCGGGGTGGCAATTGCTGATGGGAATGGTTTTGCTGAACATGGAGAAGTTTGGGGATCAAAGAATGAAGCTGTAAGTAATGAGGTGCCATTTGTTGATGGGAATTGTGTTGTTTACAGTGGAGAAGTTCAGGGCTCTAAGAATGGAGCTGTAAATAATGAGGTGGTAATTGCAGATGAGATTGGTGTTACTGAAGGTCAAGAGGATCACTGCTTGCAGAATGGAACTGTGGATAATGTAGTGGCAAATGCAAATGAAGGGAACTCTGGTTCAGTTGAATGTTTTCAAACATATAAGAGGCGCAAGCATGTAAAGTTGAGTTCAGAATTTGAAGTCCAGGAGAACAGCAGAAAACATATGGCAGCTGCAAGTCAACTGTCAGAACAGGCAGTGAAGAAACCATTTGATTTAGCTGTAGGCAACACTTCAAAAGATCATTCACATGACCATTGGGGGAATGTTGTACTAAAGCAATTATATCATTCATTAGGCAATGATAATGGTGGCATGGAGTGGTGTATAAGGGAAGCACTCATGAGCCATCCTAAAATTAGTTGTGCCACTACAATGACGGAAACTCTTAATATTGTCAAGGATGGTCAGGAGTGCTCTCCGCAATTAGAAAGTTTGTTTTATAGATTACAGAGTGAAGCTAATGGACATGAAAATGTTGTGAACAATGGATTTTCTAGTGAGTCAAATGGCCATGGTGCAACTGGCAGGTGTCAGCGTGTGTTCCGTGATATCTTAGCCTCTGAGAAGTTCAGTTCATTATGTAAAGTGCTACTTGAAAATTTCCGAGGAATGAAACCTGAAACTGTATTTGACTTTAGTTTGATAAACTCAAGGATGAAAGGGCAAGCTTATGAACAATCCCCTACACTTTTCTTATCAGATTTTCAACAGGTTTGGCGAAAGCTTCAAAATACTGGAAATCAGATTGTTGCTATGGCCAGGAGCCTCTCCAACATGTCAAAAGCTTCCTTCTGTGAGCAGGTGGGAATTTCAGCGCAGAGTTCCTTTGAAGATGAAAAACAAGTGCTCTGTAACCAGGAATCCATCTCTCACATGAAACCAGAGCAGACAGTAGAATGTGTTGCATTCAAAGTTGGCAACTGTTGGCATTGTGGAGACAAAGCAGATGGGATAGACTGTTTGGTTTGTGATTCATGTGAGGAGATGTATCATCTGTCCTGTATTGAGCCTGCCGTGAAGGAAATACCCCGCAAAAGCTGGTTCTGTGCCAATTGTACTGCTAATGGAATTGGATGTCGACACAAGAATTGTGTGGTGTGTGAACAGTTGAATGTCCTGAAGACCCTGGATGACTTTGTTGGTGAGGAAAACTTCCCTACAAATGAGGAAACACTAAATGAATTGGAAGAGTATTCAAATTGTACTTATGATGGGATTCAAGTTTCCACAGATGGGAGAAACTCATCAAACTGCAAAATTTGTAAAATGGCGGTGGATGGTGAAAAAGTAAAAATCTGTGGTCACTCTTTTTGCCCTAGTAAATACTACCATGTAAGGTGTTTGTCAAGTAAGCAGCTAAAGTCATATGGTAACTGTTGGTATTGCCCTTCTTGTATATGCCAAGTTTGCCTCACTGACAAAGATGATGATAAGATTGTACTCTGTGATGGCTGTGATCATGCATACCACATCTACTGTATGAAACCTCCACAAAATTCTATTCCGAAAGGGAAATGGTTCTGCATAAAATGCGAGGCAGGGATACAGGCAATACGCCAGGCAAGAAAGGCATATGAGAGTAAAAAAGGCAAAGTTGGTCAGAATGATTCAAAGCCAAATGAAGATATTGACAAGAAATGGAACAAAAAGCGAGGACGGGAATCAGACAAAGTTGGTGGAATGATGGACATGCTTATAAATGCTGCAAATACTCTGAATTCTGAAGAGGACATGAATGCAATGCTGATTGACTCAAAGAAAACATTAACATGA 2412 0.4175 MEAEEGSSNGDNGEGVGLDWRLGSQDGDNGGRILGGNGVAEGEGDRGLKDGAVNNGVAIEAEEVWGLKKEAVDNGVAVVGGDGVVEGEEVRGLKNVTVNNGMAIEGGNGVAEGKVWALKNEVINSGVAIADGNGAAEDGEVSGSKNDVIGVAIADGNGFAEHGEVWGSKNEAVSNEVPFVDGNCVVYSGEVQGSKNGAVNNEVVIADEIGVTEGQEDHCLQNGTVDNVVANANEGNSGSVECFQTYKRRKHVKLSSEFEVQENSRKHMAAASQLSEQAVKKPFDLAVGNTSKDHSHDHWGNVVLKQLYHSLGNDNGGMEWCIREALMSHPKISCATTMTETLNIVKDGQECSPQLESLFYRLQSEANGHENVVNNGFSSESNGHGATGRCQRVFRDILASEKFSSLCKVLLENFRGMKPETVFDFSLINSRMKGQAYEQSPTLFLSDFQQVWRKLQNTGNQIVAMARSLSNMSKASFCEQVGISAQSSFEDEKQVLCNQESISHMKPEQTVECVAFKVGNCWHCGDKADGIDCLVCDSCEEMYHLSCIEPAVKEIPRKSWFCANCTANGIGCRHKNCVVCEQLNVLKTLDDFVGEENFPTNEETLNELEEYSNCTYDGIQVSTDGRNSSNCKICKMAVDGEKVKICGHSFCPSKYYHVRCLSSKQLKSYGNCWYCPSCICQVCLTDKDDDKIVLCDGCDHAYHIYCMKPPQNSIPKGKWFCIKCEAGIQAIRQARKAYESKKGKVGQNDSKPNEDIDKKWNKKRGRESDKVGGMMDMLINAANTLNSEEDMNAMLIDSKKTLT* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0194 803 Pfam PHD-finger 521 567 IPR019787 -
Gso13g0194 803 Pfam PHD-finger 679 725 IPR019787 -
Gso13g0194 803 ProSiteProfiles Zinc finger PHD-type profile. 677 727 IPR019787 -
Gso13g0194 803 PANTHER HISTONE ACETYLTRANSFERASE 301 790 - -
Gso13g0194 803 SUPERFAMILY FYVE/PHD zinc finger 624 678 IPR011011 -
Gso13g0194 803 SUPERFAMILY FYVE/PHD zinc finger 518 566 IPR011011 -
Gso13g0194 803 Gene3D - 418 569 - -
Gso13g0194 803 MobiDBLite consensus disorder prediction 1 51 - -
Gso13g0194 803 MobiDBLite consensus disorder prediction 739 768 - -
Gso13g0194 803 SMART PHD_3 630 679 IPR001965 -
Gso13g0194 803 SMART PHD_3 682 725 IPR001965 -
Gso13g0194 803 SMART PHD_3 520 566 IPR001965 -
Gso13g0194 803 ProSitePatterns Zinc finger PHD-type signature. 521 565 IPR019786 -
Gso13g0194 803 PANTHER D4, ISOFORM A 301 790 - -
Gso13g0194 803 SUPERFAMILY FYVE/PHD zinc finger 679 731 IPR011011 -
Gso13g0194 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 683 IPR013083 -
Gso13g0194 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 684 726 IPR013083 -
Gso13g0194 803 ProSiteProfiles Zinc finger PHD-type profile. 518 568 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0194 Gso-Chr13 10919184 10936754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0194 679 742 C2H2 Transcription Factor Family AT3G01460 50.000 1.76e-14 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso13g0194 PHD 2.6e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0194 - - gmx:100786712 1598.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0194 13 10919184 10936754 Gso6g1004 6 9698448 9705252 PCT
Gso6g1004 6 9698448 9705252 Gso13g0194 13 10919184 10936754 PCT