Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0192 ATGTCTACAGCTGGTCAGGTCATCAAGTGCAGAGCTGCGGTGGCATGGGAAGCAGGGAAGCCACTATCGATAGAAACCATAGAAGTGGCACCACCCCAGAAAGGTGAAGTGCGTTTGAAGATCCTCTTCAACTCCCTTTGCCGTACAGATGTTTACTGGTGGGATGCTAAGGGCCAGACTCCGCTGTTTCCTCGTATCTTAGGCCACGAAGCTTCGGGGATTGTGGAGAGCGTGGGCAAGGGTGTGACACATCTGAAACCAGGTGACCATGCTCTCCCAATATTCACTGGGGAGTGTGGTGAATGCACCTATTGCAAGTCTGAAGAGAGCAACCTGTGTGAGCTTCTCAGGATCAACACTGACAGAGGAGTGATGCTCAGTGATGGCAAAACAAGGTTCTCCAAAAATGGACAACCTATTTACCACTTCGTTGGAACCTCCACTTTCAGTGAATACACTGTTCTCCATGAAGGATGTGTCGCCAAGATCAACCCTGCTGCCCCTCTTGACAAAGTTGCTGTTGTCAGTTGTGGATTCTGCACAGGTTTTGGGGCTACTGTGAATGTTGCAAAGCCAAAGCCTAATAATACTGTTGCTGTATTTGGATTAGGAGCTGTTGGTCTTGCTGCCTGTGAAGGGGCAAGGGTTTCTGGTGCATCTAGAATCATCGGGGTTGATTTACTTACCAATCGATTTGAACAAGCCAAACAATTTGGGGTCACTGATTTTGTGAACCCGAAAGATCACAACAAACCAGTTCAAGAGGTCATTGCTGAAATGACTAATGGAGGAGTAGATCGTGCTATTGAATGCACAGGAAGCATCCAAGCATCAATCTCGGCATTTGAATGCACTCATGATGGTTGGGGTACTGCTGTCCTTGTTAGTGTGCCAAAGAAGGATGCAGAATTCAAAACTCATCCTATGAAGTTCATGGAAGGGAGAACTCTTAAGGGTACCTTCTATGGTCACTATAGACCCCGCACTGACATTCCTGGTGTTGTGGAGAAGTACCTCAACAAGGAGCTGGAGCTGGACAAATTTATCACTCACTCTGTCCCATTCTCAGAGATCAACACTGCATTTGATCTTATGCTGAAAGGGGAGGGAATAAGGTGCCTCATCTGCATGGAAGAGTAA 1140 0.4719 MSTAGQVIKCRAAVAWEAGKPLSIETIEVAPPQKGEVRLKILFNSLCRTDVYWWDAKGQTPLFPRILGHEASGIVESVGKGVTHLKPGDHALPIFTGECGECTYCKSEESNLCELLRINTDRGVMLSDGKTRFSKNGQPIYHFVGTSTFSEYTVLHEGCVAKINPAAPLDKVAVVSCGFCTGFGATVNVAKPKPNNTVAVFGLGAVGLAACEGARVSGASRIIGVDLLTNRFEQAKQFGVTDFVNPKDHNKPVQEVIAEMTNGGVDRAIECTGSIQASISAFECTHDGWGTAVLVSVPKKDAEFKTHPMKFMEGRTLKGTFYGHYRPRTDIPGVVEKYLNKELELDKFITHSVPFSEINTAFDLMLKGEGIRCLICMEE* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0192 379 Gene3D - 18 369 - -
Gso13g0192 379 PANTHER ALCOHOL DEHYDROGENASE-RELATED 3 377 - -
Gso13g0192 379 SUPERFAMILY GroES-like 328 375 IPR011032 -
Gso13g0192 379 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Gso13g0192 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Gso13g0192 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 340 IPR036291 -
Gso13g0192 379 CDD alcohol_DH_plants 8 375 - -
Gso13g0192 379 Pfam Zinc-binding dehydrogenase 205 329 IPR013149 -
Gso13g0192 379 PANTHER ALCOHOL DEHYDROGENASE 3 377 - -
Gso13g0192 379 SUPERFAMILY GroES-like 3 186 IPR011032 -
Gso13g0192 379 Gene3D - 182 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0192 Gso-Chr13 10880250 10886607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0192 16 369 Monolignol Biosynthesis Gene Families AT1G72680 25.691 3.13e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0192 K18857 - gmx:100775490 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1232 14 29417839 29431032 Gso13g0192 13 10880250 10886607 GST