Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0186 ATGGATCAACACCACTTCCTCCACCACCACCACTATCACCACCCCCAAGAACACCGCAATCGATACACCTCCCTCACACCTCAATCCCACCTCCACAGTCACCACCACAATAATCTTCCTCCACCACCGCCAAATCCTTCTCCGCCTCTTTCCTACCACCGCACACCGCAACCCTACACCCCTCCTACACCCCAACCCCAACATCAACAACAACAATTCCCTTATACACCCCTCCCAGACCGCCCTCTCGAAGAAGAACCCCAACCTCAACGTCATATCCCATACGATCTTCTCCCTCGCCGCACCACCACCCTCCCCTGGAACCCTAACCCTAACCCTAACCCTAGAATTCCTGATGATTTCGACCGCGATTATCACCACAAACACCACCGCCCTCTCCCGCCGCCCCCGCTCCCGATCGAATCCCACCGCTACGACCCCGACCGGCACCACCACCCCGTGGATCCATATGAGCAGAACCCTAGGGAGCCCCTCGCGTGGGGCGGCGGTGGCTACCACGCGCCGGGCCAGGGCGATGTGGACCCCACGTCCTACGTCCGTGTGTACACCGTGGAGTCCGACGCCGACGTGGCGGGGAGAACAACCTCCAAGAGATGGGTAATGAGTGATAGGGATAGAGGAAGAGAGATGCACGAGTCTTCTTCTGGTTTAGTGAGTAGTAATGGTAACAGTGAGAAGTATTATCATGGTTCTGAGAATAATATGATGGGTAGGTATAGTAGAGGGAATAGTAGAGAGTGTGGTCATACTCACGAATTTGAACGCACTCCTCCGAAGAAACAGGTACAGAAGAAGAGTGCTCTTCTTAGGATTCAGACGGTTAAACCTAATAATAATCATAGGAACCGCGAGAATCGCGAGGTTGAGCAGTTGCGGTACCCGGGTTATGGTTCTGAGAATGGAAATGGTTTTTACAGGGGGAAGGAGCAGTATTTTGGTCATGGGGTGAAGGGGGAAGAGAGAGAGGAGAGCCCTGTTGAGATTGATATTTCTTTTGAGTCCAATTCGTTGGTTGCGAAGGCGAAGGCGGTTGTGGCGCCGCTGCCACCACCTTCGAGTTCAGTGTCGGTTCCTGATTTGAATGTGATGCCGGTTTCGGATTCGGATTTGGTTTACGGGGAGAGGAGTAAAAGGGTTTCAGGCTCTGAAGGAGATTATTCTGGTATGCAATTGCCGCAACCAGTTAGAATGTCTTCGGTTGTTGTGGATTTAAATAGGTCGCCTTGCAAAGGGAATGATAGCTCTGGTTCTAGGAAGGAGGTTATCAGGTCGAACAAGAAGAATGTTGATGATGGTTCTTCTCGGTCTCGCACCAGGGAGGCTGATGGTTCCCGTGGGAAAAAGGAGGTGCCTAATTTTGTTAAGGTTGGCAATGTTGTTTCTGGTAAATTGACCTCGAAGATTGTCAAGAAGAAGAAAATTGTTAAGAGAGTGGTGAAGAAAGGTACTGCAAGTTCCAAGTCATCTGCGTCAAATTCACTACCGGCTAAAACCCTTCCTGGAACTGTGAAAGCGGAGAGTGTTGCACGTATTTCATTGACTGCCTCTGGTCCTGAGAAAATTGAAGCTAATTTGGATGAGAAAAGCAACACTGTCATCCAAAGCAACACTGTTGATGAGGAGGCTAAGCCTGACTGTTTGCCCCCTTTACCAAAGGAAGGGAATGTATTGAAAGAAGATGCAGAGGTAGGCTTATTGCAGCTGAGTTTGGGGCCAGATTCCAGGTCACAAGAGTGTAAGAGTGACAAAGATTCTGGTATTGGGAAAGTATCCAGGTTTGAAAGAGATGGAAACATTTCAAATTCTCTATCTTGTGCTTCTATAAGTGAAGATAAAAAGAGTGATTCTGATTGTTTAGATGCAAATGATTCTGTCCATGACATTGGAAATACTATTTCTGTTCATGATAATGCAAATACATCTGATTGTTTAGATGCAAATAATTCTGTGCTAAATACTTACAAGGTTACTAAATCATTAAGTGGAAGTAATATTTCCGTAGTCACTAACATCGATTATGATAATAAGCAATTATGTCAGAATGAAGTGTCTCTATCACCTGGGAAATATTCAAATGTAGGATCCCCACAGAATAGGAATCTTGAAGATGTAGGGGATGAACTTTTGAAAAGCAGTGATACCTTTTCATGTTCAGGAAAAACTAGGATTCAGGATGGTCTAGATTGCCTACAACATGCCAGTGCACTGAAGCACAGTTCCGATAATGGATCATCTAATTTAGAAGATAGTACTTGTGTTGACTGTTCTGGAATTATGCATTGTGCTGGAAAGCAAGTGTCCCCTGGTGATGTCGTCATATCCCCTGAGAATTGGGACACAGAAAAAGCATTCCCAAATTCTAATATTTCTGCTGGATCTGGTGAAGGGGACACAAATAAGATAAAAAAAAGAAGAGCTAGAACACTCTTAAATTTTTTGAGTTCAGAGATGGAGTGCTTATCTTCAAACCATGTAAATCCAGACAGCCTTGCAAATAATGTGGATGGAGGCTCTAGTCTGTTGTTGAAAGATCCATCTCCTTCAGAAGTTTTAGAGCAACCTGTTCAAAGCTTAGATTTTAACTCACTATCCGGCGTGAATGGGGTTACTGCTTTACATGGAAAAGGGGGGGTTTTAGAGGCTCAGTTTTGTGTTGGACATATTGACAATGATGATGCAAATGAGGTTTCACCAGCTTCTAAAAGGAAAAAAGTCACAGCTAACCCAAATTTCACAAAATGTCAATCGGAATTGAGTGCTGTGATTGTGCCTTCCACCACATCTGAAGCTCCTATGAGTTTCAGTGATAACCAAGAACATCAGAAAGAAGTTGCTTTTGAAAGCATGGGTATGATTATTCTGTCTAGTGCTCAGTCAATGCCTTATTCAGAGGATATTACTAAAATGCCTGAGAATGTTTTGGCTGGGGGATCTTTTGAGTCTATTGATGCAAATAAGGAAACCATGAGTTCTGAGCATTTGGAATTGTGGCATTCGGATATAGTCTCTTTTTCACCATGTGAGGACTTGGCATTTCCAAATGTTCAGTTCTCATCATTGGAAGGTGAGTGCAAAGAAAACACTACTCCAATTGTGCCTACAAGTAATATTCAAACAGATATTTTGGCTGTGGGAAATATAGCTGGAGAAAAGACTGATTTACAGGCCGTTGAAGAAAATTACCAGTATAGAGAGCATGTACAAAGGTCACCAAGAGCTGATATGGAACCTAATGATCACAATATGAAGAATGATTTGCTTGCTCAGTGGAACCTTATGTCCTGTCCAGCCAGTGGTGATGAAGTCACTACAAATAATTCAAATGACGAAGTGATTGAGGATGCACCTGGATTATCAGATATGTTTTCTCAAGGGATGGTATCTGAAGTACCGGATAGAAGGGTTTTAGAATTTACAGCAATCAACGATGAAAATATTTTTGGAGTTCAAGAAAATCCAGATAACATATCTATGGTTGGACATGATTCCAACTTAAATACTTCATCAATACAGCAGACTAAAAAAAATATGAAGTCAGATCATGCAATTGAACATAGTAACCTGATCACAAAGAAGACAATGTCAGAACAATCCCAAGTTTCTTCCAAAGTTACAACTCAGGCTCTAAATTCATATTGTTTTGGGTTGAGTGGGACCAAAAATCAGTCAGGTAGTATCATTCCCAAAACTTTTCCAGGTCATTCTTTCACCTTTTCAAAGACATCTGCCTCCTCACCTCATGTATCAAAGCCTCGAACTTGGCATCGTACAGGTAATAATCCTCCGGCTTCTCTACCTAGAATCAAGCCTTCATTAGGAACAGTTCCTCCCAAAAAGCCAATTCTAGAAATGAAAGGGAACTTTCAAAATACCTCCTATGTTCGTAAAGGTAACAGTCTTGTAAGGAAACCTACTCCAGTTTCCACTCTACCTCATATCTCCTCTGTTAATCAGACATCTTTGGGCATAGATGAAATACCAAAAAGCATTAAATCTGGAGGGAGGGCTGATGTGACAGATAAACAAATGTACTTGAGAACAGGAGCAACAAATGCTCCACAGCAGAGAACACCTCCACTACCAATTGACACCAAATCAGAGGAAAATACATCTTCCTCATTGGTAGAACCTCCTTCTGGTGGTTGCTGTGAAAATGCATCAGACCTTAGGAAATTTATAGAAACTGATAATATTGCACCAAACTCTTCTGAAGATGCACTGAAGCATTATGAAACTTTAGAAAATCAACCTGGTCCATCTGATAATGGGGATAGCCAAGGTGAAGCAATCGATGGAAATGTTTTTCCTTTGAATACAAAGAGAATAGTATACATAAAGCCCAAAACAAATCAATTGGTTGCAACATCAAATTCTTGTGATGTTTCTGTCTCTACTGATGACAATCTCCAAACTGCCTTCTCTGATGGCTACTACAAGAGAAGAAAAAATCAATTGATTAGGACTACATTTGAAAGCCATATCAACCAGACAGTTGCAATGTCCAATAACACGGCATATTCTGGCGGACAAGGAACTAGCAATGCTCTTTGCAACAGGAGGTTTAGTAAGAGGCGGACACATAAGGTTGGTAGGAGTTCATGCAAACGTTCAAGAGCCTCATTAGTGTGGACACTCTGTAGCAAAAATTCTTCTGAAAATGACAGGGACTCACAACATTATCAAAGGGCTTTACCTCAATTGTTTCCATGGAAAAGACCAACATTTGCTTCAAGCTTGAATAACAGTTCCTTATCTGCAATCAGCAAAAAATTGCTTCAGTTGAGAAAGAGGGATACAGTTTACACTAGGTCAATCCACGGGTTTTCACTTCAGAAATCCAGAGTTTTAGGTGTTGGCGGGTGTAGTTTAAAATGGTCCAAATCCATTGAGAAGAAGTCAAAGCTAGCTAATGAGGAAGCCACACTTGCTGTTGCTGCAGTAGAGAGGAAGAGGAGAGAGCAGAAAAATGCAGTTTGCATCAGTTCTCAGTCAAAGAGAGAGCGTATATTTCGCATTGGTTCAGTTCGCTACAGAATGGATCCTTCCAGGAGGACACTTCAGAGGATTTCAGATGATGAATCCCTGTCCTCTGCATCTACCTGTTCAGGTTTGGCTTCCAAAAGAGCTTACATTCCAAGGAGATTAGTGATTGGAAATGATGAATATGTCCAAATTGGCAATGGTAACCAGCTTATCAGAGACCCAAAGAGACGAACTCGAAAATTGGCAAATGAAAAAGTTAGATGGAGCCTGCACACTGCCAGACAGCGATTGGCGCGAAAGCAGAAGTATTGTCAGTTTTTTACTAGATTTGGGAAATGTAACAAGGATGGAGGGAAGTGTCCTTATATTCATGATCCCTCAAAAATCGCTGTCTGTACTAAGTTCCTGAATGGTTTATGTTCTACTCCCAACTGCAAATTGACACATAAGGTTATTCCAGAGAGAATGCCAGATTGTTCTTATTTCTTGCAAGGCTTATGCTCAAATAGAAATTGTCCATATAGACATGTCAATGTGAACCCCAAGGCATCTATTTGTGAAGGATTTCTCAAGGGGTATTGTGCTGATGGGAATGAGTGTCGGAAGAAGCACAGCTATGTCTGTCCTACTTTTGAAGCAACAGGAACCTGTACTCAAGGAACCGGATGCAAACTTCATCACCCCAAAAAACAAAGCAAGGGAAAGAAAAGGAAGAGAACTGCAGATCAGAACAACAGTAGAGGGCGTTATTTTGGTTTTATTCCTGCTGATGTTTCTAAATCTGGGATGATGGTGGCTCCAAAGCGACATAGACAGAATGGTGAACTTGAAGAGGAACTTTCTGACTACATCAGCCTTGATGTTGTGAATGAAGAAGTTGCAGATGTGGTCGATCAATCATTTGAGCCAGCAGCTTTCTGTGACAACGATTCCTTGGATTTACAGTTGGATGATTTTGATGGACTTATTAAACCAGTTCTTCTGTTGAAAACAAAGTTCACATTGCAATCACCTCAGTCTAGTAGCCTCCAAGCTTTTAGGCAAGTAGCGGAGACATAG 6063 0.4262 MDQHHFLHHHHYHHPQEHRNRYTSLTPQSHLHSHHHNNLPPPPPNPSPPLSYHRTPQPYTPPTPQPQHQQQQFPYTPLPDRPLEEEPQPQRHIPYDLLPRRTTTLPWNPNPNPNPRIPDDFDRDYHHKHHRPLPPPPLPIESHRYDPDRHHHPVDPYEQNPREPLAWGGGGYHAPGQGDVDPTSYVRVYTVESDADVAGRTTSKRWVMSDRDRGREMHESSSGLVSSNGNSEKYYHGSENNMMGRYSRGNSRECGHTHEFERTPPKKQVQKKSALLRIQTVKPNNNHRNRENREVEQLRYPGYGSENGNGFYRGKEQYFGHGVKGEEREESPVEIDISFESNSLVAKAKAVVAPLPPPSSSVSVPDLNVMPVSDSDLVYGERSKRVSGSEGDYSGMQLPQPVRMSSVVVDLNRSPCKGNDSSGSRKEVIRSNKKNVDDGSSRSRTREADGSRGKKEVPNFVKVGNVVSGKLTSKIVKKKKIVKRVVKKGTASSKSSASNSLPAKTLPGTVKAESVARISLTASGPEKIEANLDEKSNTVIQSNTVDEEAKPDCLPPLPKEGNVLKEDAEVGLLQLSLGPDSRSQECKSDKDSGIGKVSRFERDGNISNSLSCASISEDKKSDSDCLDANDSVHDIGNTISVHDNANTSDCLDANNSVLNTYKVTKSLSGSNISVVTNIDYDNKQLCQNEVSLSPGKYSNVGSPQNRNLEDVGDELLKSSDTFSCSGKTRIQDGLDCLQHASALKHSSDNGSSNLEDSTCVDCSGIMHCAGKQVSPGDVVISPENWDTEKAFPNSNISAGSGEGDTNKIKKRRARTLLNFLSSEMECLSSNHVNPDSLANNVDGGSSLLLKDPSPSEVLEQPVQSLDFNSLSGVNGVTALHGKGGVLEAQFCVGHIDNDDANEVSPASKRKKVTANPNFTKCQSELSAVIVPSTTSEAPMSFSDNQEHQKEVAFESMGMIILSSAQSMPYSEDITKMPENVLAGGSFESIDANKETMSSEHLELWHSDIVSFSPCEDLAFPNVQFSSLEGECKENTTPIVPTSNIQTDILAVGNIAGEKTDLQAVEENYQYREHVQRSPRADMEPNDHNMKNDLLAQWNLMSCPASGDEVTTNNSNDEVIEDAPGLSDMFSQGMVSEVPDRRVLEFTAINDENIFGVQENPDNISMVGHDSNLNTSSIQQTKKNMKSDHAIEHSNLITKKTMSEQSQVSSKVTTQALNSYCFGLSGTKNQSGSIIPKTFPGHSFTFSKTSASSPHVSKPRTWHRTGNNPPASLPRIKPSLGTVPPKKPILEMKGNFQNTSYVRKGNSLVRKPTPVSTLPHISSVNQTSLGIDEIPKSIKSGGRADVTDKQMYLRTGATNAPQQRTPPLPIDTKSEENTSSSLVEPPSGGCCENASDLRKFIETDNIAPNSSEDALKHYETLENQPGPSDNGDSQGEAIDGNVFPLNTKRIVYIKPKTNQLVATSNSCDVSVSTDDNLQTAFSDGYYKRRKNQLIRTTFESHINQTVAMSNNTAYSGGQGTSNALCNRRFSKRRTHKVGRSSCKRSRASLVWTLCSKNSSENDRDSQHYQRALPQLFPWKRPTFASSLNNSSLSAISKKLLQLRKRDTVYTRSIHGFSLQKSRVLGVGGCSLKWSKSIEKKSKLANEEATLAVAAVERKRREQKNAVCISSQSKRERIFRIGSVRYRMDPSRRTLQRISDDESLSSASTCSGLASKRAYIPRRLVIGNDEYVQIGNGNQLIRDPKRRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKDGGKCPYIHDPSKIAVCTKFLNGLCSTPNCKLTHKVIPERMPDCSYFLQGLCSNRNCPYRHVNVNPKASICEGFLKGYCADGNECRKKHSYVCPTFEATGTCTQGTGCKLHHPKKQSKGKKRKRTADQNNSRGRYFGFIPADVSKSGMMVAPKRHRQNGELEEELSDYISLDVVNEEVADVVDQSFEPAAFCDNDSLDLQLDDFDGLIKPVLLLKTKFTLQSPQSSSLQAFRQVAET* 2021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0186 2020 MobiDBLite consensus disorder prediction 117 131 - -
Gso13g0186 2020 MobiDBLite consensus disorder prediction 1353 1385 - -
Gso13g0186 2020 MobiDBLite consensus disorder prediction 27 153 - -
Gso13g0186 2020 MobiDBLite consensus disorder prediction 1 20 - -
Gso13g0186 2020 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 3 326 1999 - -
Gso13g0186 2020 MobiDBLite consensus disorder prediction 251 268 - -
Gso13g0186 2020 MobiDBLite consensus disorder prediction 380 456 - -
Gso13g0186 2020 ProSiteProfiles Zinc finger C3H1-type profile. 1848 1875 IPR000571 GO:0046872
Gso13g0186 2020 MobiDBLite consensus disorder prediction 1890 1914 - -
Gso13g0186 2020 Gene3D - 1848 1912 - -
Gso13g0186 2020 MobiDBLite consensus disorder prediction 220 247 - -
Gso13g0186 2020 Gene3D - 1793 1847 - -
Gso13g0186 2020 MobiDBLite consensus disorder prediction 210 302 - -
Gso13g0186 2020 SMART c3hfinal6 1766 1794 IPR000571 GO:0046872
Gso13g0186 2020 SMART c3hfinal6 1848 1874 IPR000571 GO:0046872
Gso13g0186 2020 SMART c3hfinal6 1875 1897 IPR000571 GO:0046872
Gso13g0186 2020 SMART c3hfinal6 1821 1846 IPR000571 GO:0046872
Gso13g0186 2020 SMART c3hfinal6 1795 1819 IPR000571 GO:0046872
Gso13g0186 2020 ProSiteProfiles Zinc finger C3H1-type profile. 1766 1795 IPR000571 GO:0046872
Gso13g0186 2020 ProSiteProfiles Zinc finger C3H1-type profile. 1821 1847 IPR000571 GO:0046872
Gso13g0186 2020 Coils Coil 1644 1664 - -
Gso13g0186 2020 PANTHER CCCH ZINGC FINGER 326 1999 - -
Gso13g0186 2020 MobiDBLite consensus disorder prediction 37 68 - -
Gso13g0186 2020 MobiDBLite consensus disorder prediction 1245 1267 - -
Gso13g0186 2020 MobiDBLite consensus disorder prediction 1245 1282 - -
Gso13g0186 2020 MobiDBLite consensus disorder prediction 423 456 - -
Gso13g0186 2020 MobiDBLite consensus disorder prediction 1353 1388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0186 Gso-Chr13 10737646 10746899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0186 1772 1901 C2H2 Transcription Factor Family AT2G32930 31.618 7.87e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0186 - - gmx:100788859 3824.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1227 14 29163515 29171129 Gso13g0186 13 10737646 10746899 GST