Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0185 ATGAAAATGCTGCCACCTCCCACCGCCGGAGGTGCCTCCCACAGCGGCGCCGGTGACCGCACCGTGGTGGTGGGCATGAAGATGGACTCTCACAGCACCGAGTTGCTCACTTGGGCTCTGTTCAAAGTGGCTCAGCCCGGTGATGTTGTGCTTGCTCTTCATGTTCTTGGGAATGATGAAATTGTGAATCGAGAAGGGAAATCCTCGTTGTTTTCACTTGTCAAAGCATTTGACTCTATTCTTGCCGTTTATGAAGGATTCTGCAATTTGAAACAGGTGGATCTTAAGTTCAAAATATGCCGGGGTTCATCAGTGAGGAGAATTTTGGTTCGAGAAGCGAATGCTTATTCTGCAACACACATCATAGTTGGAAGTTCTCAAGGTCTTCATATAATTCGGCCATGTATATCTGTGGCAAGGTACTGTGCTAAGAAGTTACCAAAGGATTGTTGGGTTCTTGCTGTTGATAATGGGAAAATCGTGTTCAAGAGAGAAGGGTCACCCGCAACTCGTGCTGAATTGAAAGGACTTGACCAGGATCACAAAACTCGGTTGCTCGGTTCGATTCATAGGACAATCAGCAAGGGTTCAAAAGTGCTAGATGATGATGGTACAGGGATTCATGAAAAGGGTTGTGGTAATGGTGAATATTCAGATCACAGTTTGGCTAAGGCTTTTTTGGATTCTAAAGAATTCGTTGAGAAGAAGAGGTGCTCTATTTGTGCTTCAGAAGAAGAGTCTTGTGGTGATGCTTCTGATGAGAATAACCCTTTGGCAATAGTGCCTGTGCAGACCAACGATGCTGCTTCTAAACCAGGTTGGCCGCTGCTTCGTAAGACAATTGCATCTGACAAGAAATGTTCCGAAAAATCACTGTTGCGCCAGATCTCGGTGGTACAATGGGCAATGCAGCTACCCTCTAGAGATCTTTCATATGCTGCACATCAAGACCATAAAGCAAACAATTGTGACCAAAATAAGGATCAGTTTTTGGCTCTGGATAGCAAGAGTGGTGCTCTTGTTCCAGTGGATGCCGAAATAGGAACTGCTTCTTCGCCTGAACGCAATTCGAGAAGCATTCCTAAGGAATTGGAGGGCCTTCATGAGAAATATTCTTCCACTTGCAGATTGTTTGAGTACCAAGAACTTGTATTGGCAACATCAAATTTCTTGCCAGAAAATTTGATTGGGAAAGGAGGAAGTAGTCAGGTTTATAGAGGTTGCCTTCCTGATGGCAAGGAACTTGCTGTTAAGATCTTAAAGCCATCTGATGATGTTTTGAAGGAGTTTGTTCTAGAAATAGAAATTATCACTACCTTAAATCACAAAAACATTATTTCCCTCCTTGGATTCTGCTTTGAAGATGGCAATCTTCTTTTGGTCTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAATCTCCATGGTAATAAGAAAAATCCACTTGTGTTTGGTTGGACTGAGAGATACAAGGTGGCAATGGGTGTTGCTGAGGCTTTGGAGTATCTGCATAATAATGAAGGCCAATCTGTGATCCATCGCGATGTAAAATCATCAAATGTGTTGCTATCTGAGGATTTTGAACCCCAGCTCTCTGACTTTGGACTTGCTAAATGGGCATCAACCTCATCATCACATATAATTTGCACAGATGTTGCTGGAACCTTTGGTTACATGGCTCCTGAATACTTCATGTATGGCAAAGTAAATGACAAGATTGATGTCTATGCATTTGGTGTAGTGCTTCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGTGGTGATTATCCCAAAGGTCAAGAGAGCCTTGTCATGTGGGCAAGTCCAATTCTAAATAGTGGAAAGGTGTTACAAATGTTAGATCCAAGTTTGGGTGAGAACTATGATCATGAAGAGATGGAAAGGATGGTCTTGGCAGCTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTTATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTAGAAGCTAATGCTTTGGAAGCACCAGAAATGCTTGATGGTGAAGCTTGTCCACCTTCCAATTTGCAGTCACATCTCAACCTTGCATTGCTTGATGTGGAGGACGACTCGCTCTCCATGTGCAGCGTTGAGCAAAACGTCTCGTTGGAGGACTACTTGAGAGGCCGGTGGAGTCGCTCATCAAGCTTTGATTAA 2211 0.4378 MKMLPPPTAGGASHSGAGDRTVVVGMKMDSHSTELLTWALFKVAQPGDVVLALHVLGNDEIVNREGKSSLFSLVKAFDSILAVYEGFCNLKQVDLKFKICRGSSVRRILVREANAYSATHIIVGSSQGLHIIRPCISVARYCAKKLPKDCWVLAVDNGKIVFKREGSPATRAELKGLDQDHKTRLLGSIHRTISKGSKVLDDDGTGIHEKGCGNGEYSDHSLAKAFLDSKEFVEKKRCSICASEEESCGDASDENNPLAIVPVQTNDAASKPGWPLLRKTIASDKKCSEKSLLRQISVVQWAMQLPSRDLSYAAHQDHKANNCDQNKDQFLALDSKSGALVPVDAEIGTASSPERNSRSIPKELEGLHEKYSSTCRLFEYQELVLATSNFLPENLIGKGGSSQVYRGCLPDGKELAVKILKPSDDVLKEFVLEIEIITTLNHKNIISLLGFCFEDGNLLLVYDFLSRGSLEENLHGNKKNPLVFGWTERYKVAMGVAEALEYLHNNEGQSVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSHIICTDVAGTFGYMAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISGDYPKGQESLVMWASPILNSGKVLQMLDPSLGENYDHEEMERMVLAATLCIRRAPRARPLMSLISKLLGGDPDVIKWARLEANALEAPEMLDGEACPPSNLQSHLNLALLDVEDDSLSMCSVEQNVSLEDYLRGRWSRSSSFD* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0185 736 Pfam Protein kinase domain 394 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0185 736 SMART serkin_6 390 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0185 736 Pfam Universal stress protein family 20 152 IPR006016 -
Gso13g0185 736 Gene3D HUPs 20 156 IPR014729 -
Gso13g0185 736 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 10 730 - -
Gso13g0185 736 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 152 - -
Gso13g0185 736 Gene3D Phosphorylase Kinase; domain 1 354 464 - -
Gso13g0185 736 SUPERFAMILY Protein kinase-like (PK-like) 371 658 IPR011009 -
Gso13g0185 736 PANTHER OS01G0253100 PROTEIN 10 730 IPR045271 GO:0004714|GO:0006468
Gso13g0185 736 ProSitePatterns Serine/Threonine protein kinases active-site signature. 511 523 IPR008271 GO:0004672|GO:0006468
Gso13g0185 736 Gene3D Transferase(Phosphotransferase) domain 1 465 666 - -
Gso13g0185 736 ProSiteProfiles Protein kinase domain profile. 390 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0185 736 ProSitePatterns Protein kinases ATP-binding region signature. 396 418 IPR017441 GO:0005524
Gso13g0185 736 CDD USP_Like 21 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0185 Gso-Chr13 10723880 10728389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0185 377 657 Trihelix Transcription Factor Family AT1G68690 45.804 1.71e-74 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gso13g0185 Pkinase 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0185 - - aprc:113846853 1250.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1226 14 29099200 29103715 Gso13g0185 13 10723880 10728389 GST
Gso13g0185 13 10723880 10728389 Gso4g1771 4 47827034 47830577 PCT
Gso13g0185 13 10723880 10728389 Gso6g1307 6 12779330 12783091 PCT
Gso4g1771 4 47827034 47830577 Gso13g0185 13 10723880 10728389 PCT
Gso6g1307 6 12779330 12783091 Gso13g0185 13 10723880 10728389 PCT