Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0180 ATGCTCCAAGAGAATTCCATATTGATCACACTGTTACAAATGCTACTTCTTATCAGAAATGGCAACGGTCAGAACGAGTGCAAGAAATTGTCTTGTGGGCCTGGCCAACCCCTTATTAGATTTCCCTTCCAACTGGTGAAGGGGATCAAAGATGAATGTGCTAATCCCGGGTTTTGTTTATATTGTACTGATAAAAAGGAAACCATGGTTGTGCTCTCTACAATAGAATTCCGTGTCTACACCATACACTACGAATCTAACTTCTTTATGTTGACGGACCCGGAAAATTGCCTTCCGAACAAGTTTCTACAAATCGACAATTTTTTTCTACAGCATAACCAACTTGAATTAGGATTATTTGGAGATGAAAGAACAAACAACTTGAGCTTCTTTAACTGTTCTTCAGTTGGGCTTAGACACCTCAGAAAACAGGTTTATGGTTCTGACTTTTCTAATCAACAAGATATGATCTCCTGTCCGATTTTCGTTTCTGAATCTTACGACAGCGTCCTCGGTTTGGATCTAACATCCTGTACCAAGATGTTCGACACCACTTCGCCAGTTACGGCATACGACCTGCAGTTGAATATTTTGATTATGAGATGGTCCATACCAAATTGTACAAAGTGCGAAGCAAAAGGCAAGAGATGTAAATGGAAGAACAACAGCAACACAGAAGCAGACATTGAATGTGTTGACTGCAAACGGAAAAGAATCCATGTTCCCCAATCTTTTATCTTCGCTACTACAGGATCAATTCTTTTGGGGCTGGTGGCCATTGTTATCTTTAAGATAGCACTCTATTTTAGACAGAAAGAAGAAGACCAAGCAAGAGTGGCCAAGTTTTTAGAGGATTACAGGGCAGAAAAGCCTGCAAGATTTACCTATGCTGATTTGAAAAGAATCACCGGTGGCTTTAAAGAAAAGTTAGGGGAAGGAGCTCACGGGGCTGTATTCAGAGGAAAACTTTCAAATGAGATTCTAGTGGCTGTGAAGATCCTCAATAATACAGAGGGAGAAGGGAAGGAGTTCATTAATGAAGTGGGAATCATGGGAAAAATTCATCACATCAACGTGGTTCGTTTGCTTGGCTTCTGTGCAGAAGGATTTCATCGTGCTCTTGTCTACAATTTGTTTCCAAACGGATCCTTACAACGATTTATAGTTCCACCGGACGACAAGGACCATTTCCTTGGCTGGGAGAAGCTGCAACAGATTGCTCTTGGTATAGCTAAAGGAATTGAGTATCTTCATGAAGGTTGTAATCAACCCATTATTCATTTTGACATCAATCCTCACAATGTTCTACTTGATGACAACTTCACTCCAAAAATTTCTGATTTTGGCTTAGCCAAATTGTGTTCCAAGAATCCTAGTTTGGTGTCCATGACAGCTGCAAGAGGAACCTTGGGATACATTGCACCTGAAGTTTTCTCCAAAAACTTTGGGAATGTGTCTTATAAGTCTGATATTTACAGTTATGGAATGTTATTGTTAGAAATGGTTGGAGGAAGAAAGAATGTAGCCATGTCTTCTGCTCAAGATTTCCATGTTTTGTATCCAGATTGGATCCATAACCTGATTGATGGAGATGTACATATCCATGTTGAGGATGAATGTGATATTAAAATTGCAAAGAAATTAGCAATTGTTGGACTTTGGTGCATTCAGTGGCAGCCAGTGAATCGTCCATCTATAAAATCTGTCATACAAATGCTAGAGACTGGAGGGGAAAGCCAGTTAAATGTGCCTCCTAATCCATTCCAATCAACCACTTCAACTATTACAGGTGGACACACTAGAGTTACAAGACGACCTTTGGAGTTAGAAGTTATTCAAGAATGA 1845 0.3989 MLQENSILITLLQMLLLIRNGNGQNECKKLSCGPGQPLIRFPFQLVKGIKDECANPGFCLYCTDKKETMVVLSTIEFRVYTIHYESNFFMLTDPENCLPNKFLQIDNFFLQHNQLELGLFGDERTNNLSFFNCSSVGLRHLRKQVYGSDFSNQQDMISCPIFVSESYDSVLGLDLTSCTKMFDTTSPVTAYDLQLNILIMRWSIPNCTKCEAKGKRCKWKNNSNTEADIECVDCKRKRIHVPQSFIFATTGSILLGLVAIVIFKIALYFRQKEEDQARVAKFLEDYRAEKPARFTYADLKRITGGFKEKLGEGAHGAVFRGKLSNEILVAVKILNNTEGEGKEFINEVGIMGKIHHINVVRLLGFCAEGFHRALVYNLFPNGSLQRFIVPPDDKDHFLGWEKLQQIALGIAKGIEYLHEGCNQPIIHFDINPHNVLLDDNFTPKISDFGLAKLCSKNPSLVSMTAARGTLGYIAPEVFSKNFGNVSYKSDIYSYGMLLLEMVGGRKNVAMSSAQDFHVLYPDWIHNLIDGDVHIHVEDECDIKIAKKLAIVGLWCIQWQPVNRPSIKSVIQMLETGGESQLNVPPNPFQSTTSTITGGHTRVTRRPLELEVIQE* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0180 614 Gene3D Phosphorylase Kinase; domain 1 277 378 - -
Gso13g0180 614 Gene3D Transferase(Phosphotransferase) domain 1 379 583 - -
Gso13g0180 614 PANTHER RUST RESISTANCE KINASE LR10-RELATED 15 614 IPR045874 GO:0004672
Gso13g0180 614 Pfam Protein tyrosine and serine/threonine kinase 306 573 IPR001245 GO:0004672|GO:0006468
Gso13g0180 614 Pfam Wall-associated receptor kinase galacturonan-binding 27 91 IPR025287 GO:0030247
Gso13g0180 614 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Gso13g0180 614 ProSiteProfiles Protein kinase domain profile. 304 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0180 614 PANTHER RECEPTOR-LIKE KINASE 15 614 - -
Gso13g0180 614 SUPERFAMILY Protein kinase-like (PK-like) 290 574 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0180 Gso-Chr13 10549954 10552110 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0180 1 587 Receptor kinase-like Gene Family AT5G38260 33.977 1.02e-96 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gso13g0180 PK_Tyr_Ser-Thr 4.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0180 - - gmx:100790964 1251.88