Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0178 ATGTGGAGACAGAGCGCTTTATTGGTGTTCGTGTTATTACTAGTCCAGCAAATTTGTGCTACCAGTGAGCAAGAGCATGCTTGCCCCCCTTCTTCCTGTGGCAAAATCACCCACATAACTTATCCATTTCGATTAACAGGCGACCCAAAAGGTTGCGGTGACAAATGGTATGAGCTAGCTTGTGAAAATAATGTTACGGTGTTATATTTGTACTCTGGAAAATATCATGTGCAGGCTATCAACTACAACAATTTCACAATCCGTGTGGTGGATCCGGGTGTTCAACAGCCATATTGCTCCTCCATTCCTCGCTACTTCTTGTCTCAATCAAATTTCAGTGCAATTGATGAAGGGGATCCATACCTAGCCTTTCAAAATCGAGATTATTCTTGGGAGTACGTTTTCCAGCATATAGTTTTCTTAAATTGTAGGCATGCAGTGATTGACAATGAGAAGTATGTGGAAACTGATCCTTGCATCAAGTGGCACTCCAAAGGGTACATATACGCTATTGCTGGTGACTTAATAGCAAAGGACTTTGAAGTTGGTTGTGAGGTAAAGCTGGTTGCTCCCACATCATTGTGGGGTTTGGATACATACACTCAGATGCACAGAGCGCTTATCTATGGATTTGAGCTTTCATGGATGAATCTCGCCTGTGAGGATTATTGTGGAAATCCCTCCTGCACATTTAACTCTTCCAGTCAGATGCTTGAATGCTCCTCCCTCCGCGTCTGCCGCAATTTCGTGGTGGGATGGCAGTACCTTACTCAATGTGAAGCCGGTACTAATGTCTTAAGAGGATTGTTTGAAATTATAAGAGGACCAAACCCAGAACTTGAACATAAATTAGATGCGTATGTCTCACTATTTGTTATCTTTGGACACTACATTCTACCATTCTTGGCAAGCAAGTTTTTGTTTGGGATGACATTGTTTATTGTGCTTTTGATATACAAATGGAGAAAAAGGCATTTGTCAATATATGAAAATATTGAAAATTATCTGGAACAAAATAACCTGATGCCTATTGGATACTCATACAAAGAAATTAAGAAGATGGCTAGAGGTTTCAAGGAGAAATTGGGTGGAGGAGGCTATGGCTTTGTATTCAAGGGAAAGTTGCGTAGTGGGCCTTCTGTGGCAATTAAAATGCTACATAAAGCAAAAGGTAATGGCCAAGACTTTATTAGTGAAATTGCAACAATTGGAAGAATACATCATCAAAATGTAGTACAACTAATTGGATATTGTGTTGAAGGCTCAAAACGTGCCCTTGTTTATGAATTCATGCCCAATGGATCTCTTGACAAATTTATTTTTCCCAAAGATGGAAATATACATTTAACATATGACGAAATATATAATATAGCAATTGGAGTAGCTCGTGGGATTGCTTATCTCCATCATGGGTGCGAGATGAAAATATTGCATTTTGATATCAAACCCCATAACATCCTTCTTGATGAAACATTCACCCCAAAGGTCTCTGACTTTGGATTGGCAAAACTATATCCAATAGATAATAGCATTGTGACTAGGACAGAGGCAAGAGGGACAATTGGATATATGGCTCCAGAATTATTTTATGGAAATATTGGAGGAATATCCCACAAGGCTGATGTTTATAGCTTTGGGATGCTTTTGATAGATATGACAAATAAGAGGAAGAACCCAAATCCCCATGCAGATGATCATTCAAGTCAACTTTACTTTCCTACTTGGATTTATAATCAACTTGAAAAAGAGACAGATATAGAAATGGAAGGTGTCACAGAGGAGGAAAAGAAGATGATCATTGTTTCACTTTGGTGTATACAGTTGAAACCAAGCGATCGCCCCTCAATGAACAAAGTAGTGGAAATGCTTGAAGGAGATATTGAAAGCCTAGAAATACCTCCAAAGCCTTCTCTATATCCACATGATACAATGGAAAATGATCAAAGCATCTACTCTAGTCAAACAATGTCAACGGACTTCATTAGTTCTTCTAGTTATTCCAAGGAAATTGTGACTAATCCTTTGGTAGAGGATGTTATTTGA 2043 0.3882 MWRQSALLVFVLLLVQQICATSEQEHACPPSSCGKITHITYPFRLTGDPKGCGDKWYELACENNVTVLYLYSGKYHVQAINYNNFTIRVVDPGVQQPYCSSIPRYFLSQSNFSAIDEGDPYLAFQNRDYSWEYVFQHIVFLNCRHAVIDNEKYVETDPCIKWHSKGYIYAIAGDLIAKDFEVGCEVKLVAPTSLWGLDTYTQMHRALIYGFELSWMNLACEDYCGNPSCTFNSSSQMLECSSLRVCRNFVVGWQYLTQCEAGTNVLRGLFEIIRGPNPELEHKLDAYVSLFVIFGHYILPFLASKFLFGMTLFIVLLIYKWRKRHLSIYENIENYLEQNNLMPIGYSYKEIKKMARGFKEKLGGGGYGFVFKGKLRSGPSVAIKMLHKAKGNGQDFISEIATIGRIHHQNVVQLIGYCVEGSKRALVYEFMPNGSLDKFIFPKDGNIHLTYDEIYNIAIGVARGIAYLHHGCEMKILHFDIKPHNILLDETFTPKVSDFGLAKLYPIDNSIVTRTEARGTIGYMAPELFYGNIGGISHKADVYSFGMLLIDMTNKRKNPNPHADDHSSQLYFPTWIYNQLEKETDIEMEGVTEEEKKMIIVSLWCIQLKPSDRPSMNKVVEMLEGDIESLEIPPKPSLYPHDTMENDQSIYSSQTMSTDFISSSSYSKEIVTNPLVEDVI* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0178 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Gso13g0178 680 PANTHER RUST RESISTANCE KINASE LR10-RELATED 6 654 IPR045874 GO:0004672
Gso13g0178 680 ProSiteProfiles Protein kinase domain profile. 356 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0178 680 Gene3D Transferase(Phosphotransferase) domain 1 431 631 - -
Gso13g0178 680 Gene3D Phosphorylase Kinase; domain 1 331 430 - -
Gso13g0178 680 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
Gso13g0178 680 Pfam Protein tyrosine and serine/threonine kinase 358 623 IPR001245 GO:0004672|GO:0006468
Gso13g0178 680 Pfam Wall-associated receptor kinase galacturonan-binding 28 91 IPR025287 GO:0030247
Gso13g0178 680 SUPERFAMILY Protein kinase-like (PK-like) 347 662 IPR011009 -
Gso13g0178 680 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 6 654 - -
Gso13g0178 680 SMART serkin_6 356 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0178 Gso-Chr13 10515323 10519103 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0178 12 665 Receptor kinase-like Gene Family AT5G38260 34.412 1.68e-111 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gso13g0178 PK_Tyr_Ser-Thr 4.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0178 - - gmx:100792548 1379.77