Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0177 ATGTGGAGACAGAGAGCTTTATTGGTGTTCCTGTTATTACTAGTCCACCAAATTTGTGCTACCAGTGAGCAAGAGCATGCTTGCCCCCCTTCTTCCTGTGGCAAAATCACCCACATAACTTATCCATTTCGATTAAAAAGCGACCCAAAAGGTTGCGGCAACAGGTATGAGCTAGCTTGTGAAAACAATGTTACGGTGTTATATTTGTACTCTGGAAAATATCATGTGCAGGCTATCAACTACAACAATTTCACAATCCGAGTGGTGGATCCGGGTGTTCAACAGCCAAATTGCTCCTCCCTTCCTCGCTACTTCTTGTCTCCAACCAATTTCAGTGATGTTTATAGTTTCTTCGATAATGAGGTGGATCCATACCTAGCCTTTCAAAATCGAGATTATTCTTGGGAGCACGTTTTCCAGCATATAGTTTTCTTAAATTGTAGGCACGCAGTGATTGACAATGAGAAGTATGTGGAAACTGATCCTTGCATCAAGTGGCACTCCAAAGGGTACATATACGCTATTGCTGGTGACTTAATAGCAAAGGACTTTGAAGTTGGTTGTGAGGTAAAGCTGGTTGCTCCCACATCATGGTGGGGTTTGGATACAAATAATTCTTCATACACTCAGATGCACAGAGCGCTTCTCTATGGATTTGAGCTTTCATGGATGAATCTCGCCTGTGACCATCATTGTGGATATTCCACCTGCGCACTTGACACTTCCAGTCAGATGCTTCAATGCTCCCGTGGCAATTTCCTGGGAAGGGAGTACCCTCCTAAGTACCCTCCTGAGTACCCCACTGAACGAGGGAAATTGTCCAAGCTGCTATCATATGCAGAAGGAGCTGTTTTTGCTGTCAAAATAGGATTGTTTAAAGCTATAAGACACCCAGAATTTGAAAGTCGTCATTATTCTGCGTATGCATATCACTCAATAATATTTATTACCTTTGGACACTACATTCTACCATACTTGGTAGGCAAGTTTTTGTTTGGGATGACATTGTTTATTGTGCTTTTGATATACAAATGGAGAAAAAGGCATTTGTCAATATATGAAAATATTGAAAATTATCTGGAACAAAATAACTTGATGCCTATTGGATACTCATACAAAGAAATTAAGAAGATGGCTAGAGGTTTCAAAGAGAAATTGGGTGAAGGAGACTATGGCTTTGTATTCAAGGGAAAGTTGCGTAGCGGGCCTTTTGTGGCAATTAAAATGCTACATAAAGCAAAAGGTAATGGCCAAGACTTTATTAGTGAAATTGCAACAATTGGAAGAATACATCATCAAAATGTAGTACAACTAATTGGATATTGTGCTGAAGGCTCAAATCGTGCCCTTGTTTATGAATTCATGCCCAATGGATCTCTTGACAAATTTATTTTTACCAAAGATGGAAGTATACATTTAACATATGACGAAATATTTAATATAGCAATTGGAGTAGCTCGTGGGATTGCTTATCTCCATCATGGGTGCGAGATGCAAATTTTGCATTTTGATATCAAACCCCATAACATCCTTCTTGATGAAACATTCACCCCAAAGGTCTCTGACTTTGGATTGGCAAAACTATATCCAATAGATAATAGCATTGTGACTATGACAGCGGCAAGAGGGATAATTGGGTATATGGCTCCAAAATTATTTTATAAAAATATTGGAGGAATATCCCACAAGGCTGATGTTTATAGCTTTGGAATGCTTTTGATGGAGATGGCAAGTAAGAGGAAGAACCTAAATCCCCATGCGGATCATTCAAGTCAACTTTACTTTCCCTTTTGGATTTATAATCAACTTGGAAAAGAGACAAATATAGGAATGGAAGGTGTCACAGAGGAGGAAAATAAAATAGCAAAAAAGATGATAATTGTTTCACTTTGGTGTATACAGTTGAAACCAACCGATCGCCTCTCAATGAATAAAGTAGTGGAAATGCTTGAAGGAGACATTGAAAGCCTGGAAATACCTCCAAAGCCTTCTTTGTATCCACATGAGACAATGGAAAATGATCAAAGCATCTACTCTAGTCAAACAATGTCAACAGACTTCATTAGTTCTTCTAATTATTCCAAGGAAATTTTGACTAATCCTTTGGTAGAGGATGCTATTTGA 2124 0.387 MWRQRALLVFLLLLVHQICATSEQEHACPPSSCGKITHITYPFRLKSDPKGCGNRYELACENNVTVLYLYSGKYHVQAINYNNFTIRVVDPGVQQPNCSSLPRYFLSPTNFSDVYSFFDNEVDPYLAFQNRDYSWEHVFQHIVFLNCRHAVIDNEKYVETDPCIKWHSKGYIYAIAGDLIAKDFEVGCEVKLVAPTSWWGLDTNNSSYTQMHRALLYGFELSWMNLACDHHCGYSTCALDTSSQMLQCSRGNFLGREYPPKYPPEYPTERGKLSKLLSYAEGAVFAVKIGLFKAIRHPEFESRHYSAYAYHSIIFITFGHYILPYLVGKFLFGMTLFIVLLIYKWRKRHLSIYENIENYLEQNNLMPIGYSYKEIKKMARGFKEKLGEGDYGFVFKGKLRSGPFVAIKMLHKAKGNGQDFISEIATIGRIHHQNVVQLIGYCAEGSNRALVYEFMPNGSLDKFIFTKDGSIHLTYDEIFNIAIGVARGIAYLHHGCEMQILHFDIKPHNILLDETFTPKVSDFGLAKLYPIDNSIVTMTAARGIIGYMAPKLFYKNIGGISHKADVYSFGMLLMEMASKRKNLNPHADHSSQLYFPFWIYNQLGKETNIGMEGVTEEENKIAKKMIIVSLWCIQLKPTDRLSMNKVVEMLEGDIESLEIPPKPSLYPHETMENDQSIYSSQTMSTDFISSSNYSKEILTNPLVEDAI* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0177 707 Gene3D Phosphorylase Kinase; domain 1 355 454 - -
Gso13g0177 707 PANTHER RUST RESISTANCE KINASE LR10-RELATED 6 681 IPR045874 GO:0004672
Gso13g0177 707 ProSitePatterns Protein kinases ATP-binding region signature. 386 408 IPR017441 GO:0005524
Gso13g0177 707 PIRSF SRK 302 700 IPR024171 GO:0004674
Gso13g0177 707 PIRSF SRK 18 99 IPR024171 GO:0004674
Gso13g0177 707 SMART serkin_6 380 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0177 707 Pfam Protein kinase domain 383 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0177 707 Pfam Wall-associated receptor kinase galacturonan-binding 28 90 IPR025287 GO:0030247
Gso13g0177 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
Gso13g0177 707 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 6 681 - -
Gso13g0177 707 ProSiteProfiles Protein kinase domain profile. 380 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0177 707 Gene3D Transferase(Phosphotransferase) domain 1 455 658 - -
Gso13g0177 707 SUPERFAMILY Protein kinase-like (PK-like) 366 651 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0177 Gso-Chr13 10505796 10509867 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0177 9 692 Receptor kinase-like Gene Family AT5G38260 33.617 7.73e-106 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gso13g0177 Pkinase 3.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0177 - - gmx:106794110 1449.49