Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0176 ATGCTCCAAGGGAATTCCATATTGATCACACTGTTACTAATGCTACTTCTTATCAGAAATGGCAACTGTCAGAACAAGTGCAATAAGGAATTGTCTTGTGGGCCTGACGAACCCCTTATTAGATTCCCCTTCCAACTGGTGAAGGGGATGAAAGATGAATGTGCTAATCCCGGGTTTTGTTTATATTGTACTCAAAAAAATGAAACCATGGTTGTGCTCTCTACAATAGAATTCCATGTCCTTTTCATAAACTACAAACGTAACTACTTTAGGTTGAGGGACCCAGAAAATTGTCTTCCGAACAAGTTTCTACAAATCAACAATTTTTTTCTTCAGCACAACCAACTTGAACTAGGATTTCCTGGACATGAAGGAACAAACAACTTGAGCTTCTTTAACTGTTCTTCAGTTGGGCATAGATACCTCACAAGATGGGTTTGTTATAGTGAATACGTTGTTGGTCAACAAGATATGATCTCCTGTCCGATTCACGTGTCTAGATATTACGACAGTGTCCTCGAATGGGATCTAACATCCTGTACCAAGATGTTCGACACCATTTCGCCAGTTGAGGCATACGACCTGCAGTCGAATTCTTTGAATATGAGATGGTCCATACCAAATTGTACTAAGTGCGAAGCAAAAGGCAAGAGATGTAAATGGAAGAACAACAACACAGAAGGAGACATTGAATGTTTTGACTGCAAACCGAAAAGAATCCATGTTCCCCAATCTTTTATTTTCGCTACTACAGGCTCAATTTTTTTGGGGCTGGTGGTCATTGTTGTCTTTAAGATAGCCCTCTATTTTAGACAGAAAGAAGACGACCAAGCAAGAGTGGCCAAGTTTTTAGAGGATTACAGGGCAGAAAAGCCTGCAAGATTTACCTATGCTGATTTGAAAAGAATCACTGGTGGCTTTAAAGAAAAGTTAGGGGAAGGAGCTCATGGAGCTGTATTCAGAGGAAAACTTTCAAATGAGATTCTAGTGGCTGTGAAGATCCTCAATAATAAAGAGGGAGAAGGGAAGGAGTTCATTAATGAAGTGGGAATCATGGGAAAAATTCATCACATCAACGTGGTTCGTTTGCTTGGCTTCTGTGCAGAAGGATTTCATCGTGCTCTTGTCTACAATTTGTTTCCAAACGGATCCTTACAACGATTTATAGTTCCACCGGACAACAAGGACCATTTCCTTGGCTGGGAGAAGCTGCAAAAGATTGCTCTTGGTATAGCTAAAGGGATTGAGTATCTTCATCAAGGTTGTAATCAACCCATTATTCATTTTGACATCAATCCTCACAATGTGCTACTTGATGACAACTTCACTCCAAAAATTTCTGATTTTGGCTTAGCCAAATTGTGTTCCAAGAATCCTAGTTTGGTGTCCATGACAGCTGCAAGAGGAACCTTGGGATACATTGCACCTGAAGTTTTCTCCAGAAACTTTGGAAATGTGTCTTACAAGTCTGATATTTACAGTTATGGAATGTTATTGTTAGAAATGGTTGGAGGAAGAAAGAATGTAGACATGTCTTCTGCCCAAGATTTCCATGTTTTGTATCCGGATTGGATCCATAACCTGATTGATGGAGATGTACATATTCATGTTGAGGATGAAGGTGATATTAAAATTGCAAAGAAATTAGCAATTGCTGGACTTTGGTGCATTCAGTGGCAGCCAGTGAATCGTCCATCTATAAAATTTGTCATACAAATGTTAGAAACTGGAGAGGAAAACCAGTTAAATGTGCCTCCTAATCCATTCCACTCAACCACTTCAACTATTACTAGTGGACACACTAGAGTTACAAGACGACCTTTGGAGTTAGAAGTTATTCAAGAATGA 1848 0.395 MLQGNSILITLLLMLLLIRNGNCQNKCNKELSCGPDEPLIRFPFQLVKGMKDECANPGFCLYCTQKNETMVVLSTIEFHVLFINYKRNYFRLRDPENCLPNKFLQINNFFLQHNQLELGFPGHEGTNNLSFFNCSSVGHRYLTRWVCYSEYVVGQQDMISCPIHVSRYYDSVLEWDLTSCTKMFDTISPVEAYDLQSNSLNMRWSIPNCTKCEAKGKRCKWKNNNTEGDIECFDCKPKRIHVPQSFIFATTGSIFLGLVVIVVFKIALYFRQKEDDQARVAKFLEDYRAEKPARFTYADLKRITGGFKEKLGEGAHGAVFRGKLSNEILVAVKILNNKEGEGKEFINEVGIMGKIHHINVVRLLGFCAEGFHRALVYNLFPNGSLQRFIVPPDNKDHFLGWEKLQKIALGIAKGIEYLHQGCNQPIIHFDINPHNVLLDDNFTPKISDFGLAKLCSKNPSLVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDMSSAQDFHVLYPDWIHNLIDGDVHIHVEDEGDIKIAKKLAIAGLWCIQWQPVNRPSIKFVIQMLETGEENQLNVPPNPFHSTTSTITSGHTRVTRRPLELEVIQE* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0176 615 PANTHER RUST RESISTANCE KINASE LR10-RELATED 15 615 IPR045874 GO:0004672
Gso13g0176 615 Gene3D Phosphorylase Kinase; domain 1 279 379 - -
Gso13g0176 615 Pfam Protein kinase domain 308 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0176 615 Pfam Wall-associated receptor kinase galacturonan-binding 27 94 IPR025287 GO:0030247
Gso13g0176 615 PANTHER RECEPTOR-LIKE KINASE 15 615 - -
Gso13g0176 615 ProSiteProfiles Protein kinase domain profile. 305 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0176 615 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Gso13g0176 615 SUPERFAMILY Protein kinase-like (PK-like) 291 575 IPR011009 -
Gso13g0176 615 Gene3D Transferase(Phosphotransferase) domain 1 380 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0176 Gso-Chr13 10488022 10490309 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0176 1 588 Receptor kinase-like Gene Family AT5G38260 34.776 1.39e-103 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gso13g0176 Pkinase 5e-43 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0609 19 21702037 21710169 Gso13g0176 13 10488022 10490309 GST