Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0173 ATGTGGAGACAGAGAGCTTTATTGGTGTTCCTGTTATTACTAGTCCACCAAATTTGTGCAACCAATGAGCAAGAGCATGCTTGCCCCCCTTCTTCCTGTGGCAAAATCACCAACATAACTTATCCATTTCGATTAAAAGGCGACCCAGAAGTTTGCGGGGTCAACAGGTATTGGCTAGCTTGTGAAAACAATGTTACGGTGTTATATTTGTACTCTGGAAAATATCATGTGCAGGCTATCAACTACAACAATTTCACAATCCGTGTGGTGGATCCGGGTGTTCAACAGCCATATTGCTCCTCCATTCCTCGCTACTTCTTGTCTCCAACCAATTTCAGTGCAATTGATGAAGGGTATCCATACCTAGCCTTACAAAATCGAGATTATTCTTGGGAGCACGTTTTCCAGCATATAGTTTTCTTAAATTGTAGGCATGCAGTGATTGACAATGAGAAGTATGTGGAAACTGATCCTTGCATCAAGTGGCACTCCAAAGGGTACATATACGCTATTGCTGGTGACTTAATAGCAAAGGACTTTGAAGTTGGTTGTGAGGTAAAGCTGGTTGCTCCCACATCATGGCGGGGTTTGGATACAAATAATTCTTCATACACTCAGATGCACAGAGCGCTTCTCTATGGATTTGAGCTTTCATGGATCAATTTCGCCTGTGGCGATCAGTGTGGATATTTTTATTCCGACTGCGCATTTGACGCTTCCATTCAGAAGCTTCAATGCCCCTGCCGCAATTTCCTGGGGGGACAGCTGTTCCAGCTTCAATGTGCTAAAGGGACATGGTCCAGGCTGCTAACATCTGCAGAAGAAGCTTTTAATGCTGTCATAAAAGGATTGTTTGAAACTATAAATGGGCCAAACCCAGAACTTGAACGTGAAATCGGTGCCTATGACTCAATATTTATTGCCTTTGGACACTACATTCTACCATACTTGGCAGGCAAGTTTTTGTTTGGGATGACATTTTTTATTGTGCTTTTGATATACAAATGGAGAAAAAGGCATTTGTCAACATATGAAAATATTGAAAATTATCTAGAACAAAATAACTTGATGCCTATTGGATACTCATACAAAGAAATTAAGAAGATGGCTAGAGGTTTCAAAGACAAATTGGGTGAAGGAGGCTATGGCTTTGTATTCAAGGGAAAGTTGCGTAGTGGGCCTTCTGTGGCAATTAAAATGCTACATAAATCAAAAGGTAACGGCCAAGACTTTATTAGTGAAATTGCAACAATTGGAAGAATACATCATCAAAATGTAGTACAATTAATTGGATATTGTGTTGAAGGCTCAAAACGTGCCCTTGTTTATGAATTCATGCCCAATGGATCTCTTGACAAATTTATTTTTACCAAAGATGGAAATATACATTTAACATATGACAAAATATATAATATAGCAATTGGAGTAGCTCGTGGGATTGCTTATCTCCATCATGGGTGCGAGATGCAAATTTTGCATTTTGATATCAAACCCCATAACATCCTTCTTGATGAAACATTCACCCCAAAGGTCTCTGACTTTGGATTGGCAAAACTATATCCAATAGATAATAGCATTGTGACTATGACAGCGGCAAGAGGGACAATTGGGTATATGGCTCCAGAATTATTTTATAAAAATATTGGAGGAATATCCCACAAGGCTGATGTTTATAGCTTTGGAATGCTTTTGATGGAGATGGCAAGTAAGAGGAAGAACCTAAATCCCCATGCAGATCATTCAAGTCAACTTTACTTTCCCTTTTGGATTTATAATCAACTTGGAAAAGAGACAGATATAGAAATGGAAGGTGTCACAGAGGAGGAAAATAAAATAGCAAAAAAGATGATCATTGTTTCACTTTGGTGTATACAGTTGAAACCAAGCGATCGTCCCTCAATGAACAAAGTAGTGGAAATGCTTGAAGGAGACATTGAAAGCCTGGAAATACCTCCAAAGCCTTCTCTATATCCACATGAGACAATGGAAAATGATCAAAGCATCTACTCTAGTCAAACAATGTCAATGGACTTCATTAGTTCTTCTAGTTATTCCAAGGAAATTGTGACTAATCCTTTGGTAGAGGATACTATTTGA 2097 0.3891 MWRQRALLVFLLLLVHQICATNEQEHACPPSSCGKITNITYPFRLKGDPEVCGVNRYWLACENNVTVLYLYSGKYHVQAINYNNFTIRVVDPGVQQPYCSSIPRYFLSPTNFSAIDEGYPYLALQNRDYSWEHVFQHIVFLNCRHAVIDNEKYVETDPCIKWHSKGYIYAIAGDLIAKDFEVGCEVKLVAPTSWRGLDTNNSSYTQMHRALLYGFELSWINFACGDQCGYFYSDCAFDASIQKLQCPCRNFLGGQLFQLQCAKGTWSRLLTSAEEAFNAVIKGLFETINGPNPELEREIGAYDSIFIAFGHYILPYLAGKFLFGMTFFIVLLIYKWRKRHLSTYENIENYLEQNNLMPIGYSYKEIKKMARGFKDKLGEGGYGFVFKGKLRSGPSVAIKMLHKSKGNGQDFISEIATIGRIHHQNVVQLIGYCVEGSKRALVYEFMPNGSLDKFIFTKDGNIHLTYDKIYNIAIGVARGIAYLHHGCEMQILHFDIKPHNILLDETFTPKVSDFGLAKLYPIDNSIVTMTAARGTIGYMAPELFYKNIGGISHKADVYSFGMLLMEMASKRKNLNPHADHSSQLYFPFWIYNQLGKETDIEMEGVTEEENKIAKKMIIVSLWCIQLKPSDRPSMNKVVEMLEGDIESLEIPPKPSLYPHETMENDQSIYSSQTMSMDFISSSSYSKEIVTNPLVEDTI* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0173 698 PANTHER RUST RESISTANCE KINASE LR10-RELATED 6 672 IPR045874 GO:0004672
Gso13g0173 698 ProSitePatterns Protein kinases ATP-binding region signature. 377 399 IPR017441 GO:0005524
Gso13g0173 698 Pfam Wall-associated receptor kinase galacturonan-binding 28 91 IPR025287 GO:0030247
Gso13g0173 698 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 6 672 - -
Gso13g0173 698 SMART serkin_6 371 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0173 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 491 503 IPR008271 GO:0004672|GO:0006468
Gso13g0173 698 Pfam Protein kinase domain 374 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0173 698 CDD STKc_IRAK 377 643 - -
Gso13g0173 698 SUPERFAMILY Protein kinase-like (PK-like) 357 642 IPR011009 -
Gso13g0173 698 ProSiteProfiles Protein kinase domain profile. 371 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0173 698 Gene3D Transferase(Phosphotransferase) domain 1 446 649 - -
Gso13g0173 698 Gene3D Phosphorylase Kinase; domain 1 345 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0173 Gso-Chr13 10429979 10452755 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0173 6 683 Receptor kinase-like Gene Family AT5G38260 34.101 3.93e-114 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gso13g0173 Pkinase 5.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0173 - - gmx:100305367 1431