Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0172 ATGCTCCAAGGGAATTCCATATTGATCACACTGTTACTAATGCTACTTCTTATCAGAAATGGCAACGGTCAGAACAAGGGCAATAAGGAATTGTCTTGTGGACCTGGCGAACCCCTTATTAGATTTCCCTTCCAACTGGTGAAGGGGATCAAAGATGAATGTGCTAATCCCGGGTTTTGTTTATATTGTACTAAAAAAAATGAAACCATGGTTGTGCTCTCTACAATAGAATTCCGTGTCTATTCCATAGACTACGAATTTAACTTCTTTAGGTTGAAGGACCCGGAAAATTGCCTTCCGAACAAGTTTCTACAAATCAACAATTTTTTTCTTCAGCATAACCAACTTGAACTAGGATTTCCTGGACATGAAGGAACAAACAACTTGAGCTTCTTTAACTGTTCTTCAGTTGGGTATACATACCTCAGAAGATTTGTTTATGGTCCTTACTGTTTGGATTTTAGTCAACAAGATATGATCTCCTGTCCGATTTACGTTTCTAGTTCTTACGACAGCGTCCTCGATTTGGATCTAACATCCTGTACCAGGATGTTTGACCTCATTTCGCCAGCTGAGGCAGACGACCTGCAGTGGAATTCTTTGAATATGAGATGGTCCATACCAAATTGTACAAAGTGCGAAGCAAAAGGCAAGAGATGTAAATGGAAGAACAACAGCAACACAGAAGGAGACATTGAATGTTTTGGCTACAAACGGAAAAGAATCCATGTTCCCCAATCTTTTATTTTCGCTACTACAGGCTCAATTTTTTTGGGGCTGGTGGTCATTGTTGTCTTTAAGATAGCACTCTATTTTAGACAGAAAGAAGACGACCAAGCAAGAGTGGCCAAGTTTTTAGAGGATTACAGGGCAGAAAAGCCTGCAAGATTTACCTATGCTGATTTGAAAAGAATCACCGGTGGCTTTAAAGAAAAGTTAGGGGAAGGAGCTCACGGGGCTGTATTCAGAGGAAAACTTTCAAATGAGATTCTAGTGGCTGTGAAGATCCTCAATAATACAGAGGGAGAAGGGAAGGAGTTCATTAATGAAGTGGGAATCATGGGAAAAATTCATCACATCAACGTGGTTCGTTTGCTTGGCTTCTGTGCAGAAGGATTTCATCGTGCTCTTGTCTACAATTTGTTTCCAAACGGATCCTTACAACGAATTATAGTTCCACCGGACGACAAGGACCATTTCCTTGGCTGGGAGAAGCTGCAACAGATTGCTCTTGGTATAGCTAAAGGGATTGAGTATCTTCATCAAGGTTGTAATCAACCCATTATTCATTTTGACATCAATCCTCACAATGTGCTACTTGATGACAACTTCACTCCAAAAATTTCTGATTTTGGCTTAGCCAAATTGTGTTCCAAGAATCCTAGTTTGGTGTCCATGACAGCTGCAAGAGGAACCGTGGGATACATTGCACCTGAAGTTTTCTCCAGAAACTTTGGGAATGTGTCTTATAAGTCTGATATTTACAGTTATGGAATGTTATTGTTAGAAATGGTTGGAGGAAGAAAGAATGTAGACATGTCTTCTGCCCAAGATTTCCATGTTTTGTATCCGGATTGGATCCATAACCTGATTGATGGAGATGTACATATCCATGTTGAGGATGAAGTTGATATTAAAATTGCAAAGAAATTAGCAATTGTTGGACTTTGGTGCATTCAGTGGCAGCCAGTGAATCGTCCATCTATAAAATCTGTCATACAAATGTTAGAAACTGGAGAGGAAAACCAGTTAAATGTGCCTCCTAATCCATTCAACTCAACCACTTCAACTATTACTAGTGGACACACTAGAGTTACAAGACGACCTTTGGAGTTAGAAGTTATTCAAGAATGA 1854 0.3975 MLQGNSILITLLLMLLLIRNGNGQNKGNKELSCGPGEPLIRFPFQLVKGIKDECANPGFCLYCTKKNETMVVLSTIEFRVYSIDYEFNFFRLKDPENCLPNKFLQINNFFLQHNQLELGFPGHEGTNNLSFFNCSSVGYTYLRRFVYGPYCLDFSQQDMISCPIYVSSSYDSVLDLDLTSCTRMFDLISPAEADDLQWNSLNMRWSIPNCTKCEAKGKRCKWKNNSNTEGDIECFGYKRKRIHVPQSFIFATTGSIFLGLVVIVVFKIALYFRQKEDDQARVAKFLEDYRAEKPARFTYADLKRITGGFKEKLGEGAHGAVFRGKLSNEILVAVKILNNTEGEGKEFINEVGIMGKIHHINVVRLLGFCAEGFHRALVYNLFPNGSLQRIIVPPDDKDHFLGWEKLQQIALGIAKGIEYLHQGCNQPIIHFDINPHNVLLDDNFTPKISDFGLAKLCSKNPSLVSMTAARGTVGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDMSSAQDFHVLYPDWIHNLIDGDVHIHVEDEVDIKIAKKLAIVGLWCIQWQPVNRPSIKSVIQMLETGEENQLNVPPNPFNSTTSTITSGHTRVTRRPLELEVIQE* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0172 617 PANTHER RECEPTOR-LIKE KINASE 17 617 - -
Gso13g0172 617 Gene3D Transferase(Phosphotransferase) domain 1 382 590 - -
Gso13g0172 617 ProSiteProfiles Protein kinase domain profile. 307 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0172 617 Pfam Wall-associated receptor kinase galacturonan-binding 32 94 IPR025287 GO:0030247
Gso13g0172 617 Gene3D Phosphorylase Kinase; domain 1 281 381 - -
Gso13g0172 617 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Gso13g0172 617 PANTHER RUST RESISTANCE KINASE LR10-RELATED 17 617 IPR045874 GO:0004672
Gso13g0172 617 SUPERFAMILY Protein kinase-like (PK-like) 293 577 IPR011009 -
Gso13g0172 617 Pfam Protein kinase domain 310 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0172 Gso-Chr13 10417596 10419891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0172 30 599 Receptor kinase-like Gene Family AT1G66910 33.226 3.16e-99 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gso13g0172 Pkinase 4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0172 - - gmx:100813645 1254.58