Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0171 ATGTGGAGACAGAGAGCTTTATTGGTGTTCGTGTTATTACTAGTCCAGCAAATTTGTGCTACCAGTGAGCAAGAGCATGCTTGCCCCCCTTCTTCCTGTGGCAAAATCACCCACATAACTTATCCATTTCGATTAACAGGCGACCCAAAAGGTTGCGGTGACAAATGGTATGAGCTAGCTTGTGAAAATAATGTTACGGTGTTATATTTGTACTCTGGAAAATATCATGTGCAGGCTATCAACTACAACAATTTCACAATCCGTGTGGTGGATCCGGGTGTTCAACAGCCAAATTGCTCCTCCCTTCCTCGCCACTTCTTGTCTCCAGCCAATTTTAGTGAAATTGGTTGTTCAACTGAAGTGAATTCATCCCATCTATTTAGAAATCGAGATTCTTGGGAGCGCGCTTTCCAGCATATAGTTTTCTTAAATTGTAGGCATGCAGTGATTGACAATGAGAAGTATGTGGAAACTGATCCTTGCATCAAGTGGCACTTCTCCAAAGGGTACATATACGCTATTGCTGGTGACTTAATAGCAAAGGACTTTGAAGTTGGTTGTGAGGTAAAGCTGGTTGCTCCCACATCATGGTGGGGTTTGGATACAAATAATTCTTCATACACTCAGATGCACAGAGCGCTTCTCTATGGATTTGAGCTTTCATGGATCAATCTCGCCTGTGACGATCAGTGTGGAAATTCCAACTGCGCATTTCACGCTTCCAGTCACATGCTTCAATGCACCCAAAATATGAATGAAACTATTTTGGCTGTCAAAATAGGATTGTTTGGAGTTATAAGAGACCCAAAATTTAGACTTGGTCATTATGATGAGTATGGATATAACTCATTTGTATTTATTACCTTTGGACACTACTTTCTACCATTCTTGGCAGGCAAGTTTTTGTTTGGGATGACATTGTTTATTGTGCTTTTGATATACAAATGGAGAAAAAGGCATTTGTCAATATATGAAAATATTGAAAATTATCTGGAACAAAATAACCTGATGCCTATTGGATACTCATACAAAGAAATTAAGAAGATGGCTAGAGGTTTCAAGGAGAAATTGGGTGGAGGAGGCTATGGCATTGTATTCAAGGGAAAGTTGCATAGTGGGCCTTCTGTGGCAATTAAAATGCTACATAAAGCAAAAGGTAGCGGCCAAGACTTTATTAGTGAAATTGCAACAATTGGAAGAATACATCATCAAAATGTAGTACAACTAATTGGATATTGTGTTGAAGGCTCAAAACGTGCCCTTGTTTATGAATTCATGCCCAATGGATCTCTTGACAAATTTATTTTTCCCAAAGATGGAAATATACATTTAACATATGACGAAATATATAATATAGCAATTGGAGTAGCTCGTGGGATTGCTTATCTCCATCATGGGTGTGAGATGAAAATTTTGCATTTTGATATCAAACCCCATAACATCCTTCTTGATGAAACATTCACCCCAAAGGTCTCTGACTTTGGATTGGCAAAACTATATCCAATAGATAATAGCATTGTGACTAGGACAGAGGCAAGAGGGACAATTGGATATATGGCTCCAGAATTATTTTATGGAAATATTGGAGGAATATCCCACAAGGCTGATGTTTATAGCTTTGGGATGCTTTTGATAGATATGACAAATAAGAGGAAGAACCCAAATCCCCATGCAGATGATCATTCAAGTCAACTTTACTTTCCTACTTGGATTTATAATCAACTTGGAAAAGAGACAGATATAGAAATGGAAGGTGTCACAGAGGAGGAAAAGAAGATGATCATTGTTTCACTTTGGTGTATACAGTTGAAACCAAGCGATCGCCCCTCAATGAACAAAGTAGTGGAAATGCTTGAAGGAGATATTGAAAGCCTGGAAATACCTCCAAAGCCTTCTCTATATCCACATGATACAATGGAAAATGATCAAAGCATCTACTCTAGTCAAACAATGTCAACGGACTTCATTAGTTCTTCTAGTTATTCCAAGGAAATTGTGACTAATCCTTTGGTAGAGGATGTTATTTGA 2028 0.3836 MWRQRALLVFVLLLVQQICATSEQEHACPPSSCGKITHITYPFRLTGDPKGCGDKWYELACENNVTVLYLYSGKYHVQAINYNNFTIRVVDPGVQQPNCSSLPRHFLSPANFSEIGCSTEVNSSHLFRNRDSWERAFQHIVFLNCRHAVIDNEKYVETDPCIKWHFSKGYIYAIAGDLIAKDFEVGCEVKLVAPTSWWGLDTNNSSYTQMHRALLYGFELSWINLACDDQCGNSNCAFHASSHMLQCTQNMNETILAVKIGLFGVIRDPKFRLGHYDEYGYNSFVFITFGHYFLPFLAGKFLFGMTLFIVLLIYKWRKRHLSIYENIENYLEQNNLMPIGYSYKEIKKMARGFKEKLGGGGYGIVFKGKLHSGPSVAIKMLHKAKGSGQDFISEIATIGRIHHQNVVQLIGYCVEGSKRALVYEFMPNGSLDKFIFPKDGNIHLTYDEIYNIAIGVARGIAYLHHGCEMKILHFDIKPHNILLDETFTPKVSDFGLAKLYPIDNSIVTRTEARGTIGYMAPELFYGNIGGISHKADVYSFGMLLIDMTNKRKNPNPHADDHSSQLYFPTWIYNQLGKETDIEMEGVTEEEKKMIIVSLWCIQLKPSDRPSMNKVVEMLEGDIESLEIPPKPSLYPHDTMENDQSIYSSQTMSTDFISSSSYSKEIVTNPLVEDVI* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0171 675 Pfam Protein kinase domain 354 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0171 675 SMART serkin_6 351 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0171 675 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Gso13g0171 675 Pfam Wall-associated receptor kinase galacturonan-binding 28 91 IPR025287 GO:0030247
Gso13g0171 675 SUPERFAMILY Protein kinase-like (PK-like) 342 657 IPR011009 -
Gso13g0171 675 Gene3D Phosphorylase Kinase; domain 1 326 425 - -
Gso13g0171 675 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 6 649 - -
Gso13g0171 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Gso13g0171 675 ProSiteProfiles Protein kinase domain profile. 351 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0171 675 Gene3D Transferase(Phosphotransferase) domain 1 426 626 - -
Gso13g0171 675 PANTHER RUST RESISTANCE KINASE LR10-RELATED 6 649 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0171 Gso-Chr13 10408902 10413573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0171 12 660 Receptor kinase-like Gene Family AT5G38260 34.970 1.15e-112 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gso13g0171 Pkinase 5.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0171 - - gmx:100817899 1384.78