Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0168 ATGTCGAGGATATGCGTGAAGAATTTGCCGAAAGATGTCGCCGAGGATGAACTGCGGGAATTCTTTTCTGGAAAAGGAGGAATAATCACCGATGCCAAGCTTATGCGCACCAAAGATGGTAAGAGTCGCCAATTTGCTTTTATTGGATATCGTACTGAAGATGAAGCTCAGGAAGCCATTCGATATTTCAATAAAAATTTCCTTCGGACATCTAGAATTATTTGTGAGGTGGCTCGAAAACATGGGGATGAAAATCTTCCTCGTCCATGGAGTCGACATTCGAAGAAGAAAGACGATAAAGTGACTGCCCCAGATGTGGAGAAACCTGCTAGAGCTAATAAGGGACAAGGAGAGAATTCAAAGGGCAGTGTTGGTGATGATGTTGATGACCCGCAGCTTCAGGATTTTCTTCAGGTCATGCAGCCTCGGGTTAAGTCTAAAATGTGGGCGAATGATACATCAATTGCAACTAATGTTGACAACAGGCAGGCAATGCCAAATAAGGATAACGACGGGGCATCGGTTGCAAGTGATCAGAGTGGCTCATTAGAAGATGGTTTTCTGGAGGATTCTGAACCCAAGAACAAGTCACATGAGCCTGAACGCGATAAAGTCATTTCTGATATGGATTATTTCAAGAGTAGGGTGACGACAGAGTGGTCTGATTCTGAAAGTAGTGATGGTGAAGATGATGATGATGACAATGATTCCTCATGCATTGACAGTGATAGAGATGATCATAGTAATGCTGGTAAAGATGAAGACAATTGTGATTCAAGAAATGGTGCTCGAGAGGTAGATGTAGATCTAGAGGGCAAAGAAGATACTAGTGGAGAGAATGTTACCAATGGAAAGACTCAAGTGAACGTGACTGAGCAAGGGGGGCAATTATCAAAATCAGAAGACGAGAAAGGAGTTTTTGATTCCTGTCGGTTGTTTGTCCGTAATCTGCCATATACGACCACTGAGGAGGAACTGGAAGAACATTTCAGTCGCTTTGGAAGTGTCTCACAGGTTCATCTAGTTGTTAATAAAGATACAAAGCGATCCAAAGGAATAGCATACATTCTTTATACAGCCCCAAATATTGCAGCCAGGGCTCAAGAAGAGTTAGACAATTCAATCTTTCAAGGAAGATTATTGCATGTAATGCCAGCCTTACAAAGACATTCTGATAATCAAGAGAACAATGTTTTGAAGGACCAAAGCTCGAAAACCCTCAAACAACAGAGACAGGAAAAAAGGCAAGCAGATGAAGCTAGCGGAGATACTAGAGCATGGAATAGTCTGTTCATGCGCTCTGATACTGTTGTGGAAAACATTGCCCGGAAATTTGGTGTTAGTAAAAGTGATTTACTTGACCGAGAAGCTGATGATCTTGCTGTACGTATTGCTTTGGGAGAGACTCAAGTGATTTCAGAGACAAAAAAGGCATTTAAAAATGCTGGAGTGAATGTGGAGGCTTTGGAGGAACTTGCTAATAATAAAACAGATGAATTAAAAAGAAGCAATCATGTGCTTTTAGTGAAGAACTTGCCATATGGTTCTACAGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCGCTGGTTGTTTTCCTCGAACCAGTGGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTTCAAAGATGCTCCATTATACTTGGAGTGGGCTCCTTCCAATATTCTTAGCCAAAGTTCAACATCTAAAAATAATGAAATAAATGGTGCAATTGGTGAAAATGAAGCCAAGAGGCAGATATTGGAGCAACAAGTGGAAAGAATAACAGATGTGGATATTGATTCAGACAGAGTACAGGCCCGGTCCCTGTTTGTCAAGAACCTAAATTTCAAGACTATAGATGAAAGTCTGAGGAAACATTTAACTGAACACATGAAAGAGGGAAGCATTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTGTTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAAAGATTTACAGGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTAATGTCAAGAATGATGGGCAAAAACAAAAGACACTTGAGAAGGATAGGAGTTCAACAAAATTGCTCATAAAAAATGTTGCTTTTGAGGCAACAGAGAAGGACCTGAGACGATTGTTTAGCCCATTCGGCCAGATTAAGAGCTTAAGGTTGCCAATGAAGTTTGGAAACCATAGAGGCTTTGCTTTTGTAGAGTATGTTACTCAGCAGGAGGCACAAAATGCCCTCAAAGCACTTTCAAGCACCCATCTCTATGGGAGGCATCTGGTGATAGAGAGAGCGAAAGAAGCTGAGAGCTTGGAAGAACTGCGGGCTCGAACAGCTGCCCAATTTAGTGATGAACAGAATGGATTTCAAAGTGCTATGAAATTTTCCAAGAAAAGGAAGCAGGTTGACTTCTTGGATGAAGGGAAGATGAAGTTTGGAAGAATGGCTGACTAG 2556 0.4112 MSRICVKNLPKDVAEDELREFFSGKGGIITDAKLMRTKDGKSRQFAFIGYRTEDEAQEAIRYFNKNFLRTSRIICEVARKHGDENLPRPWSRHSKKKDDKVTAPDVEKPARANKGQGENSKGSVGDDVDDPQLQDFLQVMQPRVKSKMWANDTSIATNVDNRQAMPNKDNDGASVASDQSGSLEDGFLEDSEPKNKSHEPERDKVISDMDYFKSRVTTEWSDSESSDGEDDDDDNDSSCIDSDRDDHSNAGKDEDNCDSRNGAREVDVDLEGKEDTSGENVTNGKTQVNVTEQGGQLSKSEDEKGVFDSCRLFVRNLPYTTTEEELEEHFSRFGSVSQVHLVVNKDTKRSKGIAYILYTAPNIAARAQEELDNSIFQGRLLHVMPALQRHSDNQENNVLKDQSSKTLKQQRQEKRQADEASGDTRAWNSLFMRSDTVVENIARKFGVSKSDLLDREADDLAVRIALGETQVISETKKAFKNAGVNVEALEELANNKTDELKRSNHVLLVKNLPYGSTENELAKMFGKFGSLDKIILPPTKTLALVVFLEPVEARAAFRGLAYKRFKDAPLYLEWAPSNILSQSSTSKNNEINGAIGENEAKRQILEQQVERITDVDIDSDRVQARSLFVKNLNFKTIDESLRKHLTEHMKEGSILSVKVKKHLKNGKNVSMGFGFVEFDSPETATNVCKDLQGTVLDSHALILQPCNVKNDGQKQKTLEKDRSSTKLLIKNVAFEATEKDLRRLFSPFGQIKSLRLPMKFGNHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVIERAKEAESLEELRARTAAQFSDEQNGFQSAMKFSKKRKQVDFLDEGKMKFGRMAD* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0168 851 SUPERFAMILY RNA-binding domain, RBD 3 91 IPR035979 GO:0003676
Gso13g0168 851 Gene3D - 280 427 IPR012677 -
Gso13g0168 851 MobiDBLite consensus disorder prediction 393 423 - -
Gso13g0168 851 MobiDBLite consensus disorder prediction 157 181 - -
Gso13g0168 851 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 727 794 IPR000504 GO:0003723
Gso13g0168 851 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Gso13g0168 851 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 627 701 IPR000504 GO:0003723
Gso13g0168 851 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 507 569 IPR000504 GO:0003723
Gso13g0168 851 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 382 IPR000504 GO:0003723
Gso13g0168 851 CDD RRM4_RBM19_RRM3_MRD1 505 576 - -
Gso13g0168 851 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 80 IPR000504 GO:0003723
Gso13g0168 851 Gene3D - 621 721 IPR012677 -
Gso13g0168 851 SMART rrm1_1 626 704 IPR000504 GO:0003723
Gso13g0168 851 SMART rrm1_1 3 76 IPR000504 GO:0003723
Gso13g0168 851 SMART rrm1_1 726 797 IPR000504 GO:0003723
Gso13g0168 851 SMART rrm1_1 311 384 IPR000504 GO:0003723
Gso13g0168 851 SMART rrm1_1 506 573 IPR000504 GO:0003723
Gso13g0168 851 MobiDBLite consensus disorder prediction 223 239 - -
Gso13g0168 851 Gene3D - 496 602 IPR012677 -
Gso13g0168 851 Gene3D - 722 825 IPR012677 -
Gso13g0168 851 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 505 577 IPR000504 GO:0003723
Gso13g0168 851 MobiDBLite consensus disorder prediction 83 130 - -
Gso13g0168 851 SUPERFAMILY RNA-binding domain, RBD 624 801 IPR035979 GO:0003676
Gso13g0168 851 Gene3D - 1 124 IPR012677 -
Gso13g0168 851 MobiDBLite consensus disorder prediction 240 278 - -
Gso13g0168 851 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 725 801 IPR000504 GO:0003723
Gso13g0168 851 MobiDBLite consensus disorder prediction 279 296 - -
Gso13g0168 851 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 388 IPR000504 GO:0003723
Gso13g0168 851 CDD RRM3_RBM19_RRM2_MRD1 311 384 - -
Gso13g0168 851 CDD RRM5_RBM19_like 625 706 IPR034423 -
Gso13g0168 851 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 828 - -
Gso13g0168 851 MobiDBLite consensus disorder prediction 83 114 - -
Gso13g0168 851 CDD RRM1_MRD1 2 78 - -
Gso13g0168 851 PANTHER RNA-BINDING PROTEIN 19-RELATED 2 828 - -
Gso13g0168 851 MobiDBLite consensus disorder prediction 406 421 - -
Gso13g0168 851 Coils Coil 486 506 - -
Gso13g0168 851 CDD RRM6_RBM19_RRM5_MRD1 725 799 - -
Gso13g0168 851 SUPERFAMILY RNA-binding domain, RBD 502 591 IPR035979 GO:0003676
Gso13g0168 851 Coils Coil 400 420 - -
Gso13g0168 851 MobiDBLite consensus disorder prediction 157 301 - -
Gso13g0168 851 MobiDBLite consensus disorder prediction 187 222 - -
Gso13g0168 851 SUPERFAMILY RNA-binding domain, RBD 303 394 IPR035979 GO:0003676
Gso13g0168 851 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 625 708 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0168 Gso-Chr13 10298914 10316986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0168 2 83 Eukaryotic Initiation Factors Gene Family AT1G49760 36.585 1.82e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0168 K14787 - gmx:100796243 1632.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1220 14 28840739 28850582 Gso13g0168 13 10298914 10316986 GST