Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0167 ATGAGGAATCCATCATCAACAACAACAACAGCAGCAACAACAACAACCAAGACCAAGGTGAAGAACAATAGTAACAACAACATTGGTAGCAACAACTCTCCATGTTGTAACAAGGTTGGGTTGAAGCGAGGTCCATGGACGCCAGAAGAAGACGAGGTATTAGCGAATTACATCAAGAAAGAAGGAGAAGGACGGTGGAGAACGCTCCCCAAGCGCGCCGGACTTCTCCGCTGCGGCAAGAGCTGCCGCCTTCGCTGGATGAACTACCTCCGCCCCTCCGTTAAGCGGGGCCACATCGCCCCCGACGAGGAAGATCTCATCCTCCGCCTCCACCGCCTCCTCGGCAACCGGTGGTCTTTGATAGCTGGGAGGATTCCTGGAAGAACAGATAATGAAATAAAAAACTATTGGAACACCCATCTAAGTAAAAAGCTTATTAGCCAAGGGATTGATCCAAGAACTCATAAGCCTCTTAACCCAGCATCCATTAATGTTCCTTCTTCTTCCACTACTTCTTCTAAACCTCTTCCAATGATCATTACCAACAACCATATTAACCCTGTTCATCACGATCTCACCAACATGTTTAATCAAGGAGTTCATCAAGTTCATCATCTGGGTCAACATCACCACCAACCTCCAGCTTCTAATCCCTATGATAACCATAACCCAGTACCTGCTGCTGCCACCGGTGATGTTTCTGCAATGGCTTTCATGGACAACAACAACGAGGATTGCAACGATGATATCAACATCAATTATTACTCCGACGATGTTTTTTCTTCCTTCCTCAACTCTTTGATCAACGATGATGCTTTTGCGGCGCAACAGCATCACGTGCAAACGGAAATCCCCACACCCAGTGAGCGTAGCATCATGAATCCACTTCCATGTGATGATCGTGTTGGTGGTCATCTGGGTTCAATCGCCACTGCTTCTGCAGCGCAAGGTTACGATGATGAACTTGGGGTTCTGTGGGAATCGCCACTCGTGAATGCTGCTACTTTCAGCCAACACGTTGACGATCACATCACCAAGAGGGTTCATGATCACCACAATCAATAG 1065 0.4742 MRNPSSTTTTAATTTTKTKVKNNSNNNIGSNNSPCCNKVGLKRGPWTPEEDEVLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPASINVPSSSTTSSKPLPMIITNNHINPVHHDLTNMFNQGVHQVHHLGQHHHQPPASNPYDNHNPVPAAATGDVSAMAFMDNNNEDCNDDININYYSDDVFSSFLNSLINDDAFAAQQHHVQTEIPTPSERSIMNPLPCDDRVGGHLGSIATASAAQGYDDELGVLWESPLVNAATFSQHVDDHITKRVHDHHNQ* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0167 354 Gene3D - 100 163 - -
Gso13g0167 354 SUPERFAMILY Homeodomain-like 40 137 IPR009057 -
Gso13g0167 354 MobiDBLite consensus disorder prediction 160 174 - -
Gso13g0167 354 MobiDBLite consensus disorder prediction 1 33 - -
Gso13g0167 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 90 IPR017930 -
Gso13g0167 354 PANTHER TRANSCRIPTION REPRESSOR MYB5-LIKE 26 286 - -
Gso13g0167 354 ProSiteProfiles Myb-like domain profile. 38 90 IPR001005 -
Gso13g0167 354 MobiDBLite consensus disorder prediction 152 174 - -
Gso13g0167 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 145 IPR017930 -
Gso13g0167 354 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 26 286 - -
Gso13g0167 354 CDD SANT 101 141 IPR001005 -
Gso13g0167 354 SMART sant 95 143 IPR001005 -
Gso13g0167 354 SMART sant 42 92 IPR001005 -
Gso13g0167 354 CDD SANT 45 90 IPR001005 -
Gso13g0167 354 Gene3D - 40 96 - -
Gso13g0167 354 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Gso13g0167 354 Pfam Myb-like DNA-binding domain 43 90 IPR001005 -
Gso13g0167 354 Pfam Myb-like DNA-binding domain 101 141 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0167 Gso-Chr13 10296497 10298230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0167 28 319 MYB Transcription Factor Family AT3G13540 50.000 1.11e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso13g0167 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0167 K09422 - gmx:100797847 654.825