Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0165 ATGGATAAGCAAATTTTGTTTCTTCTTCCCCTTCTCATCATGTCCCTCTTCACTGTTTCAATAGCCGCTGAATCTTCCAGCTCATGCCCCATGGATCTCAACTATGTTGAGACCTTTCCATGGGACTCTTCATCCTGCAGAGACCCTGTTGACAAGAACCACTGCTGCCAAGTCTTGCTAAGTGTAATTGGCATAGGACTTTCCCAACATCTCAAACAAACTTCCTTGTTTCAACTTCCCAATGAAACCATTTCCTCCAATTGCTTATCCAATTTCCAAGCCAAACTCACAGCCTTGTCAATTGACCCATCTTTGGTCAATTCTTGTTTTCCCAACTCCTCCCAGTTTGTCACTAATTCCTCCACTTGTGCAGGTATTATAACCATTGATGATTGGAAGCAAAAAGTGGGGTTGATTAGCCCCTTAGACACTTCTTGCAATGGGGACCTGAGTGATCAAACTCGTTGTAGCATATGCTCTGATGCTGGCCTCAAAGTGACATCAGGGCTCAACAGTAACTCCACAAGATGTTTCTACTTCACAATTCTGTATGCTGCAGCTATTGTTAACCAGTTTGGTCCAACAAATTTAGGCACGGCAAGTTGCATACTAGGCATGCCACTTTCTGTAAAAGGGTCATCAAATAGAGGACTAGTGTTGAAGCTTGTTATTGGGCTATTGGGTGCTTTTGTTGGTGTTCTGCTTGCTTTTGTGTTGATTGTTGTCTATAGAAAGTGGGATAAGAGAAGGAAGGAAGATATGCATCACAGGGAAATTGAAAGCGGTGTGAGGAACAGTGTTTTGCCTAACACTGGTGCCAAATGGTTTCACATATCGGAGCTTGAGCGAGCCACAAGTAAATTTTCTCAGAGGAACATGCTAGGCCAAGGTGGTGATGGTGTTGTGTACAAAGGGACTCTTTCGGATGGCACCGTGGTCGCGGTTAAGGAGATTTTTGGTTTGGAGACTAAAGGGGATGAAGATTTCACCTATGAGGTGGAGATCATAAGCAAGATAAAGCACAGGAATCTTCTTGCTCTTCGCGGTTGTTGCATTTCAAGTGATAATGTGAAGGGTAAGAGGAGGTTTTTGGTTTATGACTTCATGCCTAATGGAAGCCTCAGTCACCAATTGTCAATTGCTGGTGCTAATAGGCTAACATGGCCACAAAGAAAGAACATAATCCTTGATGTGGCTAAGGGTCTTGCTTATTTGCATTATGAAATCAAACCCCCAATTTATCACCGTGACATTAAGGCTACCAACATACTTTTGGATTCCAAAATGAAAGCCAAAGTTTCTGATTTTGGTTTGGCCAAGCAAGGTAATGAGGGACAATCTCATCTCACCACAAGGGTTGCTGGCACATATGGTTATTTGGCACCAGAGTATGCTCTATATGGCCAACTAACTGAAAAAAGTGATGTGTATAGTTTCGGCATTGTGATTCTTGAGATCATGAGTGGGAGAAAAGTGCTTGACACAATGAATTCATCGGTTGTTTTGATCACGGATTGGGCATGGACACTTGCAAAATCAGGGAACATGGAAGATATTTTTGACCAATCAATAAGAGAAGAAGGACCAGAGAAGGTCATGGAAAGGTTTGTTCTTGTGGGGATACTTTGTGCTCATGCAATGGTGGCATTAAGGCCTACCATTGCTGAAGCACTTAAAATGTTAGAGGGTGATATTGACATTCCTCAATTGCCTGATAGGCCAGTGCCACTTGGTCATGAGTCTTTTCCATCTTCTTTGTTGCAAGGTTTACAAAGTGGAAGATCAACGGCATATTTTTCATCATATCTTTCATCTTTTTCAACAAGGATGAGCACAGTATAG 1842 0.4235 MDKQILFLLPLLIMSLFTVSIAAESSSSCPMDLNYVETFPWDSSSCRDPVDKNHCCQVLLSVIGIGLSQHLKQTSLFQLPNETISSNCLSNFQAKLTALSIDPSLVNSCFPNSSQFVTNSSTCAGIITIDDWKQKVGLISPLDTSCNGDLSDQTRCSICSDAGLKVTSGLNSNSTRCFYFTILYAAAIVNQFGPTNLGTASCILGMPLSVKGSSNRGLVLKLVIGLLGAFVGVLLAFVLIVVYRKWDKRRKEDMHHREIESGVRNSVLPNTGAKWFHISELERATSKFSQRNMLGQGGDGVVYKGTLSDGTVVAVKEIFGLETKGDEDFTYEVEIISKIKHRNLLALRGCCISSDNVKGKRRFLVYDFMPNGSLSHQLSIAGANRLTWPQRKNIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMKAKVSDFGLAKQGNEGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVLDTMNSSVVLITDWAWTLAKSGNMEDIFDQSIREEGPEKVMERFVLVGILCAHAMVALRPTIAEALKMLEGDIDIPQLPDRPVPLGHESFPSSLLQGLQSGRSTAYFSSYLSSFSTRMSTV* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0165 613 CDD STKc_IRAK 294 563 - -
Gso13g0165 613 Pfam SPARK 24 177 IPR043891 -
Gso13g0165 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Gso13g0165 613 Gene3D Transferase(Phosphotransferase) domain 1 369 567 - -
Gso13g0165 613 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 13 589 - -
Gso13g0165 613 SUPERFAMILY Protein kinase-like (PK-like) 273 578 IPR011009 -
Gso13g0165 613 PANTHER OS01G0253100 PROTEIN 13 589 IPR045271 GO:0004714|GO:0006468
Gso13g0165 613 SMART serkin_6 288 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0165 613 Gene3D Phosphorylase Kinase; domain 1 248 368 - -
Gso13g0165 613 ProSiteProfiles Protein kinase domain profile. 288 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0165 613 Pfam Protein kinase domain 290 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0165 Gso-Chr13 10270152 10272473 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0165 18 582 Receptor kinase-like Gene Family AT1G11050 52.381 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Gso13g0165 Pkinase 1.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0165 - - gmx:100820563 1179.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1219 14 28790129 28792176 Gso13g0165 13 10270152 10272473 GST