Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0162 ATGGATAGGCAAGTGATGCAGATGCTCCTTTTTCTCATGTCCCTCTTCACCATTTTCGCACCTTGGATTACTGCATCTTTCTCATGCCCCATAGATCTCAGCTATGTTGACACCATTCCATGGAACACTTCAACATGCAAAGACCCAATTGACAAAGAACCATGCTGCGACATACTTCTCAGTGTCTTTGCCATTGGCCTTGCCGAACTCCTCAAAGACACTAAAACATTTTACCTTCCCAATGAAAGCACTTCCTCCTCTTGCTTACATGACTTCAATCTCAGGCTTCAAGCCTTGTCAATTCCACCAAAGATGGTCCCTTTATGCTTCCCTAACTCAACAAGGTTTGTTTTCAATGCTTCAGCTTGTGCAGGCATTAGAACCACGCTTGATTGGACGCAACGGGTTGGCATGGTTAGCCCAGTAGACACTTTTTGCAATGGAGACCTCAAAGACAAAACTCGTTGCAAAACTTGCACTGAAGCTGCATACCAAGTCACTTCTCAGCTCACAACTATTGACCCAAATGCTAACACAACAAAATGTTTTTACTACATAGTGTTGTATGCTGCTGCTGTTGTGAATCAGTTTGGTACAACCGATGTAAGCACCACATCTTGCATACTAGGCCTGAGGCAACCCTCTAGTGGGGTAATAGAAGAGGGGTCAAGTAATACAGAAGAAGTGTTGAAATTGGGTTTTAGTTTGTTGGGTGTTATTATTGGTGTTGTGCTTGCTTTGTTGACGATAGTTATGTACAAAAAGTGGGATAAGAGAAGGAAGGAACATGTTTATCACAGGGAGATTGAGAACAAGGTGAGGGCTGGTGTTTTGCCTAATGCTGGTGCTAAATGGTTTGATGTATCAGAGCTTAAGTGTGCCACAAACAAATTTTCGCCGAGGAATGTGGTTGGTCAAGGTGGTGATGGGGTTGTGTACAAAGGGATTCTTTCTGATGGTGCTGTGGTTGCTGTTAAGGAGATTTTTGATTTGGAAGCTAAAGGGGATGAAGATTTCTGCTATGAGGTGGAGATCATAAGCAAGATCAAGCACAGGAATCTTCTTGCTCTTCGGGGTTGTTGCGTTGCTAGTGATAATTTGAATGGTAAGAGGAGGTTTTTGGTTTATGATTTCATGCCTAATGGTAGTCTTAGTGATCAATTGTGTTTTGATGGTGCTAATAGGTTAACTTGGCCTCAAAGAAAGAACATAATCCTTGGTGTGGCTAGGGGGCTTGCTTATTTGCACTATGAAATCAAACCCCCAATTTATCATCGTGATATTAAGGCTACCAACATACTTTTGGATTCCGAAATGAATGCAAAATTGGCAGATTTTGGGTTGGCCAAGCAAGGTAGTGAGGACCAATCTCATCTCACTACAAAGGTTGCTGGCACATATGGTTATGTGGCACCAGAGTATGCTCTATATGGGAAACTAACTGAGAAAAGTGATGTGTATAGTTTTGGTATTGTGATTCTTGAAATCATGAGTGGAAGAAAAGTGCTTGATGCTTTGAATTCATCTGCGGATTCAATCACGGATTGGGTATGGACACTTGTGGAATCTGGAAAGAAGGGGGAAATTTTTTGTGAGTCAATAAGGGAAGGGCCAGTAAAAGTTATGGAAAGGTTTGTTCTTGTTGGAATGCTATGTGCTCATGGGGTTGTGACTTTAAGGCCTACTATTGTTGAGGCCCTTAAGATGTTAGAGGGTGACATTGAAATTCCTGAATTACCTGAGAGGCCAGTGCCACTAGGTCATGTGTCCTTTCAATCTTCTCTTTTGCATGGTCTACACAAAAGCGGTTGA 1812 0.4222 MDRQVMQMLLFLMSLFTIFAPWITASFSCPIDLSYVDTIPWNTSTCKDPIDKEPCCDILLSVFAIGLAELLKDTKTFYLPNESTSSSCLHDFNLRLQALSIPPKMVPLCFPNSTRFVFNASACAGIRTTLDWTQRVGMVSPVDTFCNGDLKDKTRCKTCTEAAYQVTSQLTTIDPNANTTKCFYYIVLYAAAVVNQFGTTDVSTTSCILGLRQPSSGVIEEGSSNTEEVLKLGFSLLGVIIGVVLALLTIVMYKKWDKRRKEHVYHREIENKVRAGVLPNAGAKWFDVSELKCATNKFSPRNVVGQGGDGVVYKGILSDGAVVAVKEIFDLEAKGDEDFCYEVEIISKIKHRNLLALRGCCVASDNLNGKRRFLVYDFMPNGSLSDQLCFDGANRLTWPQRKNIILGVARGLAYLHYEIKPPIYHRDIKATNILLDSEMNAKLADFGLAKQGSEDQSHLTTKVAGTYGYVAPEYALYGKLTEKSDVYSFGIVILEIMSGRKVLDALNSSADSITDWVWTLVESGKKGEIFCESIREGPVKVMERFVLVGMLCAHGVVTLRPTIVEALKMLEGDIEIPELPERPVPLGHVSFQSSLLHGLHKSG* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0162 603 CDD STKc_IRAK 313 572 - -
Gso13g0162 603 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Gso13g0162 603 Pfam SPARK 26 183 IPR043891 -
Gso13g0162 603 ProSiteProfiles Protein kinase domain profile. 298 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0162 603 Pfam Protein kinase domain 302 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0162 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Gso13g0162 603 SUPERFAMILY Protein kinase-like (PK-like) 281 571 IPR011009 -
Gso13g0162 603 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 18 597 - -
Gso13g0162 603 Gene3D Phosphorylase Kinase; domain 1 258 378 - -
Gso13g0162 603 SMART serkin_6 298 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0162 603 Gene3D Transferase(Phosphotransferase) domain 1 379 576 - -
Gso13g0162 603 PANTHER OS01G0253100 PROTEIN 18 597 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0162 Gso-Chr13 10233505 10235673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0162 24 592 Receptor kinase-like Gene Family AT1G11050 49.153 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Gso13g0162 Pkinase 3.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0162 - - gmx:100800481 1203.73