Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0161 ATGGCATTTCGCCAGTCGAGGCTGCGAAACAGGGACTTCATGTGGATTCGCGTGCTTTCAGCTTTTTCAGGTTGTTGTCCACGTGTCATGGAGCATGGCATTTCGCCAATAGGGGTTGCGAAACCAGCATGGCATTTCGCCATTGGCATTGCATCCACAACCTTCCCGACACCTCTGGTAGGTCACAGTGCGGCTCGCGCAGGTTTCGACCAGGCGGTGATCGACACGTTCCTGACGCTGGAGTGTGTGGTGTGCTTGAACGAGTTCGAGGACACCGAAACGCTGCGTTTAATCCCCAAGTGCGACCTCGTGTTCCACTCTGAGTGCATAGACGAGTGGATAGCTTCCCACACCACTTACCTCGTGTGTCGTGCCAAACCCGTCCCTATTTCTGCCAACATCAATGGCGAAATGCCATGCTGA 423 0.5437 MAFRQSRLRNRDFMWIRVLSAFSGCCPRVMEHGISPIGVAKPAWHFAIGIASTTFPTPLVGHSAARAGFDQAVIDTFLTLECVVCLNEFEDTETLRLIPKCDLVFHSECIDEWIASHTTYLVCRAKPVPISANINGEMPC* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0161 140 Pfam Ring finger domain 81 123 IPR001841 -
Gso13g0161 140 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 66 127 - -
Gso13g0161 140 PANTHER RING FINGER DOMAIN-CONTAINING 66 127 - -
Gso13g0161 140 SUPERFAMILY RING/U-box 77 123 - -
Gso13g0161 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 129 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0161 Gso-Chr13 10218989 10219617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0161 26 126 Rapid Response to Elicitors AT3G05200 41.379 3.04e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0161 K10664 - gmx:106795606 296.589