Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0159 ATGTCGTCGACGACGCAGAATCGTCGTTCGTCGTTTACTTCCTCGACGGCGTCGTCTTTGGCGAAAGCGAAACGACATCCATCGTCGGTGTCGTCGTCGTCGTCGGGGAAGGCGAAGGTGGTTTCTACTCAGAACTTGGCTGTGAAGAGAGCGCCTCTCGCCAACCTCACTAATCAAAGGAACGCGCCTTATTCTTCTTCTTCTTCTTCTTTGGTGCAAGGTTCAAATAAAGTTGCCAAGACCAAGAAAGAGGCTCCTGCAAGAACCAGCGTCTCAAAATCAACAATTTCTGGGAACAAATCTTCCCAGTTAAAATCTGTTAACTCAAGCTCCGTTGTTATTCCAAAGGCTAATTCTTTATCACAAAAGAAGGATGCTGCTCCCACAGTTGCCACATTTGCCGTGCCTGTTCGTAGCGGCATTGATGTTTCTCCTAGTAAATCAGATGGAAGGTTCGTTTCTATGGATGAGACAACATCTTCATGTGATTCTATCAAGAGTCCGGATGAAGTTGAATATCTGGATAACAGGGATGTTTCAGATGTTGATTCAATTCAGAAAAAGATAATAAGCAATTTGAACATTTCTGATACCACAGAGCCCGAAGGAAACGTATGTAGTAGGGAAATAATTGTTGAGTTGGAAGAAAGAGTGGACAAGATTGTCAATATCGATAACATTTACTCTGATACGCAGCTTTGTGCAACCTATGTTTGTGACATCTACAAACACCTACGTGAATCCGAGGAAAAGAAAAGGCCTTCCACTGACTTCATGGACACAATTCAGAAGGACATAAATGTTAGCATGCGCGCTATATTGGTTGACTGGCTTGTTGAGGTGGCTGAGGAGTATCGTCTTGTACCTGAAACATTGTATTTGACAGTGAACTACTTAGATCGGTATCTTTCAGGGAATGCTATGAATAGGCAAAGGTTACAACTTCTTGGTGTTTCATGCATGATGATTGCATCTAAATATGAGGAGATTTGTGCACCTCAGGTGGAAGAATTTCGTTATATAACTGACAATACTTACTTAAAAGAAGAGGTTTTGCAAATGGAATCTGCTGTCTTGAATTATCTTGAGTTCGAAATGACAGCCCCAACAGTTAAATGTTTCTTAAGACGATTTGTTCGTGCGGCTGCTCATGATGTCCAGGAGATCCCTTCACTTCAACTGGAGTGTCTAACCAACTTTATTGCCGAATTATCTCTCTTGGAGTACAGTATGCTGTGTTATCCTCCATCACAAATAGCTGCCTCTGCAATTTTCCTTGCCAGATTTATACTTTTCCCTTCAAAGAAACCATGGAATTCCACATTGCAGCATTACACGCTCTACCGGCCTTCGGACTTGTGTGCATGTGTAAAAGATCTCCATCGTCTTTGTTGCAGCAGCCATGATTCTAATTTACCTGCAATCAGAGATAAATACAGTCAGCATAAGTACAAATGTGTGGCCAAGAAGTGCATCCCTCCTTCAATACCTCAAGAAGTTTTCCAGAGTTGA 1512 0.4226 MSSTTQNRRSSFTSSTASSLAKAKRHPSSVSSSSSGKAKVVSTQNLAVKRAPLANLTNQRNAPYSSSSSSLVQGSNKVAKTKKEAPARTSVSKSTISGNKSSQLKSVNSSSVVIPKANSLSQKKDAAPTVATFAVPVRSGIDVSPSKSDGRFVSMDETTSSCDSIKSPDEVEYLDNRDVSDVDSIQKKIISNLNISDTTEPEGNVCSREIIVELEERVDKIVNIDNIYSDTQLCATYVCDIYKHLRESEEKKRPSTDFMDTIQKDINVSMRAILVDWLVEVAEEYRLVPETLYLTVNYLDRYLSGNAMNRQRLQLLGVSCMMIASKYEEICAPQVEEFRYITDNTYLKEEVLQMESAVLNYLEFEMTAPTVKCFLRRFVRAAAHDVQEIPSLQLECLTNFIAELSLLEYSMLCYPPSQIAASAIFLARFILFPSKKPWNSTLQHYTLYRPSDLCACVKDLHRLCCSSHDSNLPAIRDKYSQHKYKCVAKKCIPPSIPQEVFQS* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0159 503 SMART cyclin_7 373 462 IPR013763 -
Gso13g0159 503 SMART cyclin_7 276 360 IPR013763 -
Gso13g0159 503 Gene3D - 240 489 - -
Gso13g0159 503 Gene3D - 254 367 - -
Gso13g0159 503 MobiDBLite consensus disorder prediction 1 111 - -
Gso13g0159 503 PIRSF Cyclin_A_B_D_E 3 500 IPR039361 -
Gso13g0159 503 CDD CYCLIN 367 461 IPR013763 -
Gso13g0159 503 SUPERFAMILY Cyclin-like 229 366 IPR036915 -
Gso13g0159 503 Pfam Cyclin, N-terminal domain 240 366 IPR006671 -
Gso13g0159 503 MobiDBLite consensus disorder prediction 1 77 - -
Gso13g0159 503 ProSitePatterns Cyclins signature. 271 302 IPR006671 -
Gso13g0159 503 CDD CYCLIN 270 359 IPR013763 -
Gso13g0159 503 SUPERFAMILY Cyclin-like 369 495 IPR036915 -
Gso13g0159 503 Pfam Cyclin, C-terminal domain 369 490 IPR004367 -
Gso13g0159 503 MobiDBLite consensus disorder prediction 88 111 - -
Gso13g0159 503 SMART Cyclin_C_2 369 493 IPR004367 -
Gso13g0159 503 PANTHER CYCLINS 39 502 IPR039361 -
Gso13g0159 503 PANTHER CYCLIN-A1-1 39 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0159 Gso-Chr13 10185625 10190399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0159 1 501 Core Cell Cycle Gene Families AT1G44110 58.052 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0159 K06627 - gmx:100776207 951.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0159 13 10185625 10190399 Gso4g2060 4 51043780 51046905 PCT
Gso13g0159 13 10185625 10190399 Gso6g0986 6 9511066 9514206 PCT
Gso4g2060 4 51043780 51046905 Gso13g0159 13 10185625 10190399 PCT
Gso6g0986 6 9511066 9514206 Gso13g0159 13 10185625 10190399 PCT