Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0155 ATGGAACGTGAAGAAGGGAAACAACCTCCCCAAAAGACCCCATTACACAATCAACACGAGCAAGCTAATTCCAACAATTTTGTTCTAGAACATAACTTGCAAGAGCAAAGTGGGACATTCACAACTTTTGCATCATTTGAAAGTGAAACTGAGGGCGAGTCTTCCTTTGATGACAATGATTATGATGGGGATGCTGATTTTTTCCTGAGCCAAGAGTTCGAATCGGAACTTCAATTTCTTGAGAGTGAAGGAAGCAATTACAACAACGATGATGACAATGATGAAGATATGGAAGAAGATAACATCGATGTAGATGAATTGACTTATGAAGAGTTGATTGAGTTGGGGGATTTTATAGGACAAGAGAAGAGAGGGTTGTCAGCACATGAAATTTGTTCATGCTTGCATATTCACATTTTCCATTCTGCTGAAAACAAAAGTGGAATTGATCGTTGTGTGATTTGTCAGGTTGAATATGAAGAAGGTGAACCTTTGGTGGCAATTCAGTGCGAGCACCCTTATCACACAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGCCCAATATGTAACACTGAAATTTCAGCTCCCAAGATGGTTAGTTAA 612 0.3905 MEREEGKQPPQKTPLHNQHEQANSNNFVLEHNLQEQSGTFTTFASFESETEGESSFDDNDYDGDADFFLSQEFESELQFLESEGSNYNNDDDNDEDMEEDNIDVDELTYEELIELGDFIGQEKRGLSAHEICSCLHIHIFHSAENKSGIDRCVICQVEYEEGEPLVAIQCEHPYHTDCISKWLQIKKVCPICNTEISAPKMVS* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0155 203 MobiDBLite consensus disorder prediction 11 50 - -
Gso13g0155 203 SUPERFAMILY RING/U-box 151 199 - -
Gso13g0155 203 SMART ring_2 152 192 IPR001841 -
Gso13g0155 203 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 1 200 - -
Gso13g0155 203 Coils Coil 70 90 - -
Gso13g0155 203 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 200 IPR045191 GO:0061630
Gso13g0155 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 199 IPR013083 -
Gso13g0155 203 MobiDBLite consensus disorder prediction 1 61 - -
Gso13g0155 203 Pfam RING-H2 zinc finger domain 150 193 IPR024766 GO:0008270
Gso13g0155 203 ProSiteProfiles Zinc finger RING-type profile. 152 193 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0155 Gso-Chr13 10132048 10133124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0155 90 196 C3H Transcription Factor Family AT3G63530 45.455 6.60e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0155 K19045 - gmx:100777284 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1207 14 28393795 28395405 Gso13g0155 13 10132048 10133124 GST
Gso4g2080 4 51233780 51234803 Gso13g0155 13 10132048 10133124 PCT