Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0153 ATGGCCGCAGCAACACAACTCCACTTACCCCCTGGATTCCGATTCCACCCCACCGATGAAGAACTCGTCGTTCACTATCTCTGCCGCAAATGCGCTTCGCAAGAAATCGCAGTTCCAATAATCGCCGAAATCGATCTCTACAAGTACGACCCATGGGACCTTCCAGGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACCGCAAGTACCCGAACGGTTCGCGGCCGAACCGGTCCGCGGGGACCGGATACTGGAAGGCAACCGGAGCGGATAAACCGGTTGGCAAACCGAAACCTGTTGGGATCAAGAAAGCATTGGTTTTTTACGCCGGAAAAGCGCCCAAGGGAGTGAAAACTAACTGGATCATGCACGAGTATCGTCTCGCCGACGTGGATCGTTCGGTTCGCAAAAAGAACAGCTTAAGGCTGGATGACTGGGTGCTGTGTCGAATTTACAACAAGAAAGGTGCAATTGAGAAGCAGCAACCAGCACCGCCACCACCGAGTGGTGTCCACAAAATTGAATGTTACGAAATGGAAGACGTGAAGCCGGAGTATACGGCGGCGGATTGCCTGTACTTCGAGGCTTCCGACTCGGTGCCGCGGCTGCACACGACGGAGTCGAGCTGTTCGGAGCAGGTGGTGTCGGCGGAGTTTGCGAGCGAGGTGCAGAGCGAGCGGAAGAGGCAGGGCAACAGCGAGTTTTCGTATAATTACATGGATGCCACTCTCGGGAATAATCAGATGTCGCCGCTCCAGGATATCTTCATGTACCTCTCCAGGCCCTTCTGA 807 0.5415 MAAATQLHLPPGFRFHPTDEELVVHYLCRKCASQEIAVPIIAEIDLYKYDPWDLPGMALYGEKEWYFFTPRDRKYPNGSRPNRSAGTGYWKATGADKPVGKPKPVGIKKALVFYAGKAPKGVKTNWIMHEYRLADVDRSVRKKNSLRLDDWVLCRIYNKKGAIEKQQPAPPPPSGVHKIECYEMEDVKPEYTAADCLYFEASDSVPRLHTTESSCSEQVVSAEFASEVQSERKRQGNSEFSYNYMDATLGNNQMSPLQDIFMYLSRPF* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0153 268 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Gso13g0153 268 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 4 252 - -
Gso13g0153 268 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
Gso13g0153 268 PANTHER NAC TRANSCRIPTION FACTOR 56 4 252 - -
Gso13g0153 268 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Gso13g0153 268 Pfam No apical meristem (NAM) protein 10 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0153 Gso-Chr13 10093968 10095776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0153 7 268 NAC Transcription Factor Family AT1G01720 70.877 1.20e-143 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso13g0153 NAM 3.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0153 - - gmx:100170713 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1206 14 28327665 28329746 Gso13g0153 13 10093968 10095776 GST
Gso4g2116 4 51634281 51638794 Gso13g0153 13 10093968 10095776 PCT
Gso6g0925 6 8881790 8886061 Gso13g0153 13 10093968 10095776 PCT