LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso13g0147	ATGTCGTCGACGCCGCAGGACTCTGTCAAAACGACGGCGTCGGCGAAGAACACCGCGTTCGACGCGGAAGCGGCGTCGCGGCTCGTGAATGAGCTTAGGCGAAACTTCGCTTCGAACAAAACGCGCAGTTACGAGTGGAGACTGTCGCAGCTCAACGCGCTCGAGAAACTCGTCGTCGTTCACGAGCAGGAGATCGTCGACGCGCTCCGAAACGACCTCGGCAAGCCGCCACTCGAAACCGTTGCATACGAGATTGCTATGTTGAAAAACTCATGTAGAATCGCACTCAAGGAATTGAAACATTGGATGACTCCTGAAAAGGTCAAAACTTCAATCGCAACTTTTCCTTCTTCAGCTGAAATAGTATCTGAACCACTGGGGGTTGTGTTAGTCATCTCTGCATGGAACTACCCATTCTTGTTGTCACTTGATCCAGTCGTTGGAGCTATTGCAGCTGGTAATGCTGTTGTTTTAAAACCATCAGAAATTGCTCCTGCCACATCATCACTGCTGGCAAAGCTTATCGGAGACTACTTGGATAACTCATGTATTAGAGTTGTTGAGGGAGCAGTTGATGAAACATCTGCATTACTGCAGCAAAAGTGGGACAAAATTTTCTATACAGGTAATGGACGAGTGGCACGCATTGTGATGGCTGCTGCTTCAAAACACCTAACACCAGTTGTGCTGGAGCTTGGAGGAAAATCTCCAGTTGTTGTTGATTCAAATATCAATTTAAAGGTAGCAACAAGACGAATAATTGCAGGAAAGTGGGGTTCTAATAATGGGCAAGCCTGCATTTCTCCAGATTATATTATAACAACTAAAGACTATGCTCCCAAGTTGGTGGATGCGCTAAAGACTGAATTGGAGAAATTTTATGGAAAGAACCCATTGGAATCAAAAGATTTGTCCCGTGTTGTGAACTCCAACCACTTTAATCGGTTGACAAAGCTCTTGGATGATGATAAGGTTTCTGGTAAGATTGTTTATGGAGGCCAAAAGGATGAAAACAAATTGAAGATTAGCCCCACTGTTCTATTGGATGTCCCACGGGACTCTTTGATTATGAATGAGGAGATATTTGGTCCTTTACTTCCCATCCTCACGGTTGACAAACTAGAAGAAAGCTTTGACGTGATCAATTCAGGACCCAAGCCTCTCGCTGCATATATATTTACAAATAACAAGAAGCTCAAGGAGCAATTTGTTATGACTATTTCAGCTGGTGGTTTGGTTGTTAATGACACTACTTTACATCTTGCAGTTCATACTTTACCATTTGGTGGAGTTGGTGAGAGTGGAGTGGGTGCATACCATGGGAAATTCTCATTTGAAGCTTTTAGCCACAAAAAAGCTGTTCTCTATCGCAAATTTATTGGTGATGCTCCAGTAAGGTACCCACCATACACAAATACAAAGATGAGATTGCTGAAAGCTATCATAGGTGGTGGCATACATGGTATTGTTCGTGCCCTGTTTGGTTGGTGA	1491	0.44	MSSTPQDSVKTTASAKNTAFDAEAASRLVNELRRNFASNKTRSYEWRLSQLNALEKLVVVHEQEIVDALRNDLGKPPLETVAYEIAMLKNSCRIALKELKHWMTPEKVKTSIATFPSSAEIVSEPLGVVLVISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEIAPATSSLLAKLIGDYLDNSCIRVVEGAVDETSALLQQKWDKIFYTGNGRVARIVMAAASKHLTPVVLELGGKSPVVVDSNINLKVATRRIIAGKWGSNNGQACISPDYIITTKDYAPKLVDALKTELEKFYGKNPLESKDLSRVVNSNHFNRLTKLLDDDKVSGKIVYGGQKDENKLKISPTVLLDVPRDSLIMNEEIFGPLLPILTVDKLEESFDVINSGPKPLAAYIFTNNKKLKEQFVMTISAGGLVVNDTTLHLAVHTLPFGGVGESGVGAYHGKFSFEAFSHKKAVLYRKFIGDAPVRYPPYTNTKMRLLKAIIGGGIHGIVRALFGW*	497

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso13g0147	496	SUPERFAMILY	ALDH-like	27	470	IPR016161	GO:0016491
	Gso13g0147	496	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	33	452	IPR016162	GO:0016491
	Gso13g0147	496	PANTHER	ALDEHYDE DEHYDROGENASE	13	496	-	-
	Gso13g0147	496	PANTHER	ALDEHYDE DEHYDROGENASE	13	496	IPR012394	GO:0006081
	Gso13g0147	496	PIRSF	ALDH	7	487	IPR012394	GO:0006081
	Gso13g0147	496	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	230	237	IPR029510	GO:0016491
	Gso13g0147	496	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	234	434	IPR016163	GO:0016620
	Gso13g0147	496	Coils	Coil	51	71	-	-
	Gso13g0147	496	Pfam	Aldehyde dehydrogenase family	13	454	IPR015590	GO:0016491
	Gso13g0147	496	CDD	ALDH_F3FHI	25	456	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso13g0147	Gso-Chr13	9974903	9981573	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso13g0147	85	495	Aldehyde Dehydrogenase Gene Family	AT1G44170	74.209	0.0	660

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso13g0147	K00128		-	gmx:100816594	972.615

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