Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0136 ATGGACTTGAAAGAAAATTGTACTTATGTCATGCACAATTTTAAAGTGATAAAAAACAATGGTCAGTATAGAGTGTGTGATCATCAATTTAAATTGGTGTTTATTGGGGTTACTGTTGTGAGGGAGTGTGTTCTAGGGGACATCCCTTTTAGAAAATACAGGTTTGCTGGATTTGCAGATGTTGTGGCTGGCCAGTTTGAACGTGGACTATTTGTTGATGTTATTGGTGTTGTGGAGGAGGTTGTCTTTCGGCAAGTTTCAGGAAAAGGTAGAAGGGTAGTCTTCAAATTAAAGGACTTGAGCCAGCAATTTCTATCTTGCACTTGGTGGAATGATTATTGCTTGCAGTTTTTGAAGTTCTTAGATGATTATGAAGGTGATGGCCCAATTATAGTTCTATTAAGCCATTGTACGATCAAGGAAGCGCAGGGATCTTATCCCGCATCGATCAACAATTCTTTCAAGGCTTCAAAGTTAATTATTAACCAGCCTGTGATGGAGATTCAAGAATTCAATGAACGGCTTGCAGAGTTGGGCATTGAGGCCCAGTCAGGTTTTAAATCCCATGGTGAAGGGAGTACACAACTTTTAGGTTCTATCCAATTATCATCAAAAGAATCATTCTTTGGCAAGGCTGAGGCAAAGACTATTGTTGACATTAACACCATCTCTGAAAAATTGTTTGTCACTGTTGGCACAATTACTAGGATTGTTCTGGACAATCATTCATGGTGTTATACAACTTGCATTCAGTGCCATAAAAAAAGGGATGCAGAGATGGCGCCCTTTAGATGTGCATGCAGCAAATACAATAAGGAAGTTGTGCTTAGGTATAGGCTTGAGGTGATGATCAACCAAGGAAATGAAAGCACAAAATTCCTGCTTTGGGACCGTGAATGCAGTGAATTAATTGGCCAATCAGCTGATGCAGTTAATAAGCTTAAAATTGAAGATGGTGATGTTGATTTGAATGCTTCACCCCAAGCACTTGATAAGCTGTTGGGTCATGAACTTGCTTTCAAGATAAAGGTGCAACCCAAGTTCAGGAATTCTGCTGTTTTGAAGTGTTCAGCTGACTCGAGCATGATAAATGCTGTGATGGATATGCTAGCTGATGCTGAGACATCTTCAAAAATGGATATCCCGGTTTCTGATTTCAATCATTCTGCTCAACATGAATCTCAATCCCTCTCTGTGACAGCAGATCATGATTCCATGCTTGGACTTGCCTTGACGCCTACCAAGCGGCAGACATTTCAGGATTGTGATGATGAAGCAGGGACCTCTCAAATTTAA 1296 0.402 MDLKENCTYVMHNFKVIKNNGQYRVCDHQFKLVFIGVTVVRECVLGDIPFRKYRFAGFADVVAGQFERGLFVDVIGVVEEVVFRQVSGKGRRVVFKLKDLSQQFLSCTWWNDYCLQFLKFLDDYEGDGPIIVLLSHCTIKEAQGSYPASINNSFKASKLIINQPVMEIQEFNERLAELGIEAQSGFKSHGEGSTQLLGSIQLSSKESFFGKAEAKTIVDINTISEKLFVTVGTITRIVLDNHSWCYTTCIQCHKKRDAEMAPFRCACSKYNKEVVLRYRLEVMINQGNESTKFLLWDRECSELIGQSADAVNKLKIEDGDVDLNASPQALDKLLGHELAFKIKVQPKFRNSAVLKCSADSSMINAVMDMLADAETSSKMDIPVSDFNHSAQHESQSLSVTADHDSMLGLALTPTKRQTFQDCDDEAGTSQI* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0136 431 CDD RPA1_DBD_C 211 360 IPR013955 -
Gso13g0136 431 Gene3D - 46 184 IPR012340 -
Gso13g0136 431 CDD RPA1_DBD_B_like 73 175 - -
Gso13g0136 431 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 3 323 - -
Gso13g0136 431 SUPERFAMILY Nucleic acid-binding proteins 53 175 IPR012340 -
Gso13g0136 431 Gene3D - 198 368 IPR012340 -
Gso13g0136 431 SUPERFAMILY Nucleic acid-binding proteins 213 350 IPR012340 -
Gso13g0136 431 Gene3D - 1 43 IPR012340 -
Gso13g0136 431 Pfam Replication factor-A C terminal domain 230 347 IPR013955 -
Gso13g0136 431 PANTHER REPLICATION FACTOR A 1, RFA1 3 323 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0136 Gso-Chr13 8416900 8419279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0136 20 322 Core DNA Replication Machinery Family AT5G08020 23.975 4.81e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0136 - - gmx:100777286 852.432