Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0127 ATGGCTGAGAAAATGATCAATGTTGTTGCTTCTTCCTCTGGATCTGCTTCTAAGGTATTCCCTAAAAAATATGACGTTTTTCTAAGCTTTCGAGGTGAGGACACCCGAAGGAACTTCACATGCCATCTTTACGAAGCTTTGATGCAAAAGAAAATTAAAACCTATATAGATGAACAACTTGAAAAGGGAGATCAAATCGCACTAGCACTCACCAAAGCCATCGAAGATTCTTGTATATCTATTGTCATCTTCTCAGATAACTATGCTTCCTCAAAGTGGTGCTTGGGTGAACTCTTCAAGATCTTGGAATGCAAGAAAGAAAAAGGACAGATTGTGATACCAGTGTTTTACAATATAGATCCATCCCATTGAGGAAGCAAATTGGGAGCTATAAGCAAGCCTTTGCAAAACTTGAGGGAGAGCCTGAATGCAAACAAATGGAAAGATGCTCTTACTGAAGCAGCAAATTTAGTTGGGTTGGACTCTAAAAATTATAGGAATGATGTTGAATTGCTTAAGGACATTGTTAGAGCTGTTTCGGAAAAATTGCCTCGCAGATACCAAAACCAAAGTAAAGGATTGGTTGGAATTGAGGAACATTATAAACGGATTGAATCATTTCTAAATAATGGGTCTAGTGAAGTTAGAACCCTTGGAATATGGGGCATGGGTGGCATAGGTAAAAGCACCCTTGCTACTGCTTTATATAATGAATTGTCTCCTGAGTTTGAAGGTCATTGCTTCTTCATAAATGTTTTTGATAAGTCTGAAATGAGTAATCTCCAGGGTAAAAGAGTTTTCATTGTCTTGGATGACGTGGCTACCTCTGAGCAATTAGAAAAGCTAATTGGAGAATATGATTTTTTGGGACTAGGAAGTAGGGTCATTGTTACGAGTAGAAATAAGCAAATGCTTAGCCTAGTTGATGAAATATATTCAGTCGAGGAATTGAGCTCTCATCACTCCCTTCAGCTTTTCTGTTTGACTGTTTTTGGAGAAGAACAACCTAAAGATGGATATGAAGATCTATCAAGAAGAGTAATTTTCTATTGCAAAGGTATTCCTTTGGCTTTAAAAATTTTGGGTAAAAGTCTTCGTCAAAAATGTAAAGACGCATGGGAAAGTGAATTGAGAAAAATTCAAAAGATTCTAAATGTGGAAATTCATAATGAATTAAAATTGAGTTATTATGACTTAGATTGTTCACAAAAAGAGATCTTTTTAGACCTTGCATGCTTCTTCAAAGGAGGAAAAAGAGATTGGGTAGCAGGATTATTGGAAGCTTTTGGTTTCTTTCCAGCATCTGAGATAGAAGTACTTTTAGATAAATCTCTCATAAGAATTTCAAAATACAATGAGATAGAAATGCATGACTTGACACAAGAAATGGGTCGAGAAATTATTCGTCAACAATCTATCAAAGATCCTGGAAGACGAAGCAAGTGCAATTGCTTTTATTTGATAATACATGGAACTGATGTTGTTGAAGGCATAATTTTAAATCTGCATAAATTAACTGGGGATCTATTTTTGAGCTCCGATTCCCTTGCAAAGATGACTAACCTGAGATTTCTTCGAATCCACAAAGGGTGGCGGAGTAACAACCAATTTAATGTGTTCCTTAGTAATGGTCTTGAGTCATTGTCTAACAAATTGAGGTACCTTCATTGGGATGAATGTTGTCTTGAGTCTTTGCCGTCTAACTTTTGCGCTGAACAACTTGTAGAGATTTCCATGCCTCGTAGCAAGCTCAAAAAGCTCTGGGATGGGGTTCAGAACCTCGTGAGTTTAAAGACCATTGACCTTCAAGAGTCTCGAGACTTGATTGAGATCCCAGACTTATTTATGGCCAAAAAACTTGAAAGAGTATATCTTAATCATTGTAAAAGCTTGTATCAGATCCATCTAAATTCCAAATCTCTCTATGTACTTGACCTCTTAGGTTGTTCTTCTCTCAAGGAATTCACGGTGACATCAGAGGAAATGATAGATTTGATGTTATCTCACACTGCTATATGTACATTGTCATCACCAATTGATCACTTATTGTCTTTAGAAGTGTTAGACCTAAGTGGAACTAATGTTGAGATCTTGCCTGCAAACATAAAAAACCTTTCAATGATGAGAAAGCTAAAATTAGATGATTTCTGTACGAAACTCATGTATCTGCCGGAGCTTCCACCATCCCTAACAGAGCTTCATTTAAATAATTGTCAGAGACTCATGTCTCTACCGAAGCTTCCATCATCCCTGAGAGAGCTTCATTTAAATAATTGTTGGAGACTTGTGTCCTTGCCGAAACTTCCACCATCCCTAAGAGAGCTTCACTTAAATAATTTTTGGAGACTCATGTCTTTGCCGAAGATTCCACCATCCCTAAGAGAGCTTCATTTAAATAATTGTCGGAGACTGGTATCCCTGCCGAAGCTTCCACCAGGGGTGAAAGAGGTGAGTGCCATCAACTGCATTTCTCTTAAGACAGATATAACTCAACGGCTAGTGTTACAACACATGTATCAGAGTCGCATACCCTACTTAAACAAAGACCCTACATACCGTGAGGATGAATACTTCTTCTTCCCTGGAGATCATGTCACAAACAGCAAGTATGGATTTCATACAGAAGAGAGTTCAATAACTATTCCTTATCTTCCAAAATCTCATTTATGTGGTTTCATTTATTGCATCATTCTTTTGGAGGGATCAGTCTTAAAAGATAACCGGTTTTCTTGCGCTATCTATCGAGATGATATGCTGATCAGTTTGGACCATCGCAGGATTATAGGCTGCGAAAAATTGATTTCAGATCACGTATTATTTTGGTATCATGATATCAACAAATTTGGCGGAATAAGTGAAGTGTATGATCATTTCTGCCACATAACATTTGTATTTAAATTTAATTACAATAAAGAGAGCATAAAAGGATGTGGGGTCTTTCCAGTGTACGAGTCAAATCTTTTATATACAATGAGAGAACTGGATCCTCTCCCACAACTTTTGTCTCCAGCAAAAGAAACCAAAAAAAAAAATTGTTTGCCCTTCAAAGCAAGACTCAGAGGATTCTGTAACAGTAACGGTGGTGGTCGTTGA 3093 0.3731 MAEKMINVVASSSGSASKVFPKKYDVFLSFRGEDTRRNFTCHLYEALMQKKIKTYIDEQLEKGDQIALALTKAIEDSCISIVIFSDNYASSKWCLGELFKILECKKEKGQIVIPVFYNIDPSH*GSKLGAISKPLQNLRESLNANKWKDALTEAANLVGLDSKNYRNDVELLKDIVRAVSEKLPRRYQNQSKGLVGIEEHYKRIESFLNNGSSEVRTLGIWGMGGIGKSTLATALYNELSPEFEGHCFFINVFDKSEMSNLQGKRVFIVLDDVATSEQLEKLIGEYDFLGLGSRVIVTSRNKQMLSLVDEIYSVEELSSHHSLQLFCLTVFGEEQPKDGYEDLSRRVIFYCKGIPLALKILGKSLRQKCKDAWESELRKIQKILNVEIHNELKLSYYDLDCSQKEIFLDLACFFKGGKRDWVAGLLEAFGFFPASEIEVLLDKSLIRISKYNEIEMHDLTQEMGREIIRQQSIKDPGRRSKCNCFYLIIHGTDVVEGIILNLHKLTGDLFLSSDSLAKMTNLRFLRIHKGWRSNNQFNVFLSNGLESLSNKLRYLHWDECCLESLPSNFCAEQLVEISMPRSKLKKLWDGVQNLVSLKTIDLQESRDLIEIPDLFMAKKLERVYLNHCKSLYQIHLNSKSLYVLDLLGCSSLKEFTVTSEEMIDLMLSHTAICTLSSPIDHLLSLEVLDLSGTNVEILPANIKNLSMMRKLKLDDFCTKLMYLPELPPSLTELHLNNCQRLMSLPKLPSSLRELHLNNCWRLVSLPKLPPSLRELHLNNFWRLMSLPKIPPSLRELHLNNCRRLVSLPKLPPGVKEVSAINCISLKTDITQRLVLQHMYQSRIPYLNKDPTYREDEYFFFPGDHVTNSKYGFHTEESSITIPYLPKSHLCGFIYCIILLEGSVLKDNRFSCAIYRDDMLISLDHRRIIGCEKLISDHVLFWYHDINKFGGISEVYDHFCHITFVFKFNYNKESIKGCGVFPVYESNLLYTMRELDPLPQLLSPAKETKKKNCLPFKARLRGFCNSNGGGR* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0127 1029 Pfam NB-ARC domain 259 384 IPR002182 GO:0043531
Gso13g0127 1029 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 16 257 - -
Gso13g0127 1029 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 791 974 - -
Gso13g0127 1029 SUPERFAMILY L domain-like 509 830 - -
Gso13g0127 1029 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 158 IPR035897 -
Gso13g0127 1029 Gene3D - 21 179 IPR035897 -
Gso13g0127 1029 SUPERFAMILY "Winged helix" DNA-binding domain 386 471 IPR036390 -
Gso13g0127 1029 Gene3D - 315 399 IPR042197 -
Gso13g0127 1029 Pfam Leucine Rich Repeat 572 591 IPR011713 -
Gso13g0127 1029 Gene3D - 180 257 IPR027417 -
Gso13g0127 1029 Gene3D - 258 313 IPR027417 -
Gso13g0127 1029 SMART LRR_bac_2 768 788 - -
Gso13g0127 1029 SMART LRR_bac_2 726 746 - -
Gso13g0127 1029 SMART LRR_bac_2 747 767 - -
Gso13g0127 1029 SMART LRR_bac_2 789 809 - -
Gso13g0127 1029 PRINTS Disease resistance protein signature 216 231 - -
Gso13g0127 1029 PRINTS Disease resistance protein signature 350 364 - -
Gso13g0127 1029 PRINTS Disease resistance protein signature 591 607 - -
Gso13g0127 1029 ProSiteProfiles TIR domain profile. 22 182 IPR000157 GO:0007165
Gso13g0127 1029 Pfam TIR domain 23 194 IPR000157 GO:0007165
Gso13g0127 1029 Gene3D Ribonuclease Inhibitor 662 839 IPR032675 -
Gso13g0127 1029 Gene3D Ribonuclease Inhibitor 497 661 IPR032675 -
Gso13g0127 1029 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 257 776 IPR044974 GO:0006952
Gso13g0127 1029 SMART till_3 23 156 IPR000157 GO:0007165
Gso13g0127 1029 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 257 IPR044974 GO:0006952
Gso13g0127 1029 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 791 974 IPR044974 GO:0006952
Gso13g0127 1029 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 257 776 - -
Gso13g0127 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 409 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0127 Gso-Chr13 6663985 6672561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0127 194 837 WRKY Transcription Factor Family AT5G45050 33.052 1.24e-88 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0127 - - gmx:100813640 2003.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0500 20 25232066 25239276 Gso13g0127 13 6663985 6672561 GST