Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0103 ATGAATAGGAAAATGCAGAACGAGAAGCAGGACTTGGACTTGGTGATTTCTTCTTCTTCTCTGGACGACGATATCGACTTCATTCTCAGCCAGGACCTGTTTTGCACACCGGATTACCTGACCCCTGATAACAAGTTTCCTGTGAAAGGCTTCGATAGCAACAGTGTCGACTTGGAAGAGGAAGATGGCCCTTGCCCCAAGTCACCAGAGAAGAAGCCAAGTACTTCAAAAGGCAAGCGATGCCGAATGGATGATGCTATCTCAGGAGATACTCTCAGTTCTACCTCCTCTGGTGATAATCAGCCAATTGTGGAACTTGGAAATGACTTTGTTGGAGAGTATATTACTGATAAGCCAAAGGCTCGAAACTATGTGTCTCGTTCTGCAGTTGCATTGCGTTGCAGGGTTATGCCTCCTCCTTGTATTAGAAACCCCTTTTTGAAATGCCTTTCAGAAAAGGAAATCGACCCTTTTGAAAGTCAAAGATCAAAATTTGCAGGCCTCTTCCCTGCACTTGTTGGTGGTGGTGGTGGTGGTGATTGTCTTTCACGCTACCGCAATGACTTTCATGAGATTGAGCAAATTGGTATAGGTCACTTCAGCAATGTTTTCAAAGTAATAAAGCGAATAGATGGTTGCTTGTATGCTGTGAAACACAGCACCAGGAAGTTGTGCAAGGAAACAGAAAGGGAAAAAGCCTTGATGGAAGTTCAAGCTTTGGCTGCCATAGGTTCCCATGAGAACATTGTGGGGTACTATTCTTCATGGTTTGAAAATGAACAACTGTATATTCAGATGGAGCTATGTGATCACAGCTTATCCATAAAAAATTGTCCATCATTAGTCACTGCAGGACATGAAATAGAAGCTTTGTATCAGGTTGCCAGTGCATTGCAATTTATCCATAAGAAGGGAATAGCTCATCTTGATGTTAAGCCTGAAAATATTTATGTGAAAAATGGTGTTTATAAGCTTGGTGATTTTGGATGTGCAACTCTACTTGATAATAGCCTTCCAATTGAGGAGGGTGATGCACATTATATGCCTCAGGAAATCCTTAATGAGAATTATGATCACCTTGACAAGGTTGATATCTTCTCCCTGGGAGCTTCTATGTTTGAGCTAATTAGCAGCTCGTGTTTGCCAGAACCAGAATCAGGAATTCAGTTCTTTAATCCTAAAGAGGGAAAGGTGCCATTCTTGCCAGGAGTTTCAGTGCAATTTCAAAACTTACTCACGGTCATGATGGACCCCGATCCGGTTAAGCGGCCTTCGGCTACAAAGTTGCTGAAGAGGGTCCTTGAAATGGCAAGAAATTGA 1320 0.4258 MNRKMQNEKQDLDLVISSSSLDDDIDFILSQDLFCTPDYLTPDNKFPVKGFDSNSVDLEEEDGPCPKSPEKKPSTSKGKRCRMDDAISGDTLSSTSSGDNQPIVELGNDFVGEYITDKPKARNYVSRSAVALRCRVMPPPCIRNPFLKCLSEKEIDPFESQRSKFAGLFPALVGGGGGGDCLSRYRNDFHEIEQIGIGHFSNVFKVIKRIDGCLYAVKHSTRKLCKETEREKALMEVQALAAIGSHENIVGYYSSWFENEQLYIQMELCDHSLSIKNCPSLVTAGHEIEALYQVASALQFIHKKGIAHLDVKPENIYVKNGVYKLGDFGCATLLDNSLPIEEGDAHYMPQEILNENYDHLDKVDIFSLGASMFELISSSCLPEPESGIQFFNPKEGKVPFLPGVSVQFQNLLTVMMDPDPVKRPSATKLLKRVLEMARN* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0103 439 MobiDBLite consensus disorder prediction 54 86 - -
Gso13g0103 439 SMART serkin_6 189 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0103 439 Gene3D Phosphorylase Kinase; domain 1 179 269 - -
Gso13g0103 439 SUPERFAMILY Protein kinase-like (PK-like) 184 431 IPR011009 -
Gso13g0103 439 Gene3D Transferase(Phosphotransferase) domain 1 279 435 - -
Gso13g0103 439 ProSiteProfiles Protein kinase domain profile. 189 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0103 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672|GO:0006468
Gso13g0103 439 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 24 347 - -
Gso13g0103 439 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 360 432 - -
Gso13g0103 439 PANTHER BNAA08G27310D PROTEIN 360 432 - -
Gso13g0103 439 PANTHER BNAA08G27310D PROTEIN 24 347 - -
Gso13g0103 439 Pfam Protein kinase domain 189 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0103 439 MobiDBLite consensus disorder prediction 51 100 - -
Gso13g0103 439 ProSitePatterns Protein kinases ATP-binding region signature. 195 218 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0103 Gso-Chr13 4534318 4537847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0103 26 430 Core Cell Cycle Gene Families AT1G02970 60.145 4.77e-166 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Gso13g0103 Pkinase 4.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0103 K06632 - gmx:100784055 824.313