Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0087 ATGGCTTCCAGGAAATTCGACAACCCTCACTCCGGCGACGGCGCCAGTCCAGGCAAAATCTTCATCGGAGGGTTAGCCAAAGACACCACCCTAGAGACGTTCGTGAAGTACTTTGAGAAGTACGGGGAGATAACGGACTCCGTTATAATGAAAGACCGTCACACGGGTCGGCCAAGGGGATTCGGCTTCATCACCTACGCCGATCCCTCCGTCGTTGACCAAGTCATTCAGGAGAACCACGTCGTCAACGGCAAGCAGGTCGAGATTAAGAGGACCATTCCCAAGGGCTCTTCGCAGGCTAATGACTTCAAAACCAAGAAGATTTTCGTCGGCGGCATTCCAACTTATGTGTCTGAAGATGAGCTCAAGAACTTCTTCTCCAAGTATGGGAAAGTGGTGGAGCATGAGATAATACGGGACCACACCACGAAGCGATCCCGGGGTTTTGGCTTTATAGTTTTTGACAGTGAAAAGGTTGTGGATAATATTTTGGCAGATGGGAACATGATTGATATGGGTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACCCAGCTTCTCTTCCTCCATTTGCTAGTGACTCTAGGGCACGTTCTTACAATGATGGTTTTGGTGGTTTTGGCGATTCTTATGGAAGTTTTGGTGGTAGCGGGTATGGTCCTGGTTCTTATAGGTCACTTGGAGGTTTTGGGGGTAGGCTTGGTGATTATGGTGGGTATGGGGCTGGAGATGAATTTGGTGGTAGTTTTGGGGGTTATGGTGGTGCTGGTGCTGGTGGCTATGCTGGTTTTCGAGGAGAATCATCGTTTGGCTACTCTAGTCGCTATGGATCGTACATGGGTGGCCTTGGTGCTGGTTATGGTGGCAGCGGGTTAGGCGCATATGGACGGGGTGGTGGGGCTTATGGAACCTATGGTGGTCCAAGCGCTGGTGGGGGTTATGAATCAGGTCCCGGTGCTGGTTATGGAGGAGCAGGAGGTGGAATGTATCCCAGTAGGGGAAGCTATGGTGGCAGTAGTCGTTACCATCCTTATGCAAGATAG 1059 0.5042 MASRKFDNPHSGDGASPGKIFIGGLAKDTTLETFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDQVIQENHVVNGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTYVSEDELKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDSEKVVDNILADGNMIDMGGTQVEIKKAEPKKSSNPASLPPFASDSRARSYNDGFGGFGDSYGSFGGSGYGPGSYRSLGGFGGRLGDYGGYGAGDEFGGSFGGYGGAGAGGYAGFRGESSFGYSSRYGSYMGGLGAGYGGSGLGAYGRGGGAYGTYGGPSAGGGYESGPGAGYGGAGGGMYPSRGSYGGSSRYHPYAR* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0087 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 85 IPR000504 GO:0003723
Gso13g0087 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 175 IPR000504 GO:0003723
Gso13g0087 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Gso13g0087 352 Gene3D - 18 96 IPR012677 -
Gso13g0087 352 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 352 - -
Gso13g0087 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Gso13g0087 352 Gene3D - 97 218 IPR012677 -
Gso13g0087 352 SMART rrm1_1 19 90 IPR000504 GO:0003723
Gso13g0087 352 SMART rrm1_1 107 180 IPR000504 GO:0003723
Gso13g0087 352 SUPERFAMILY RNA-binding domain, RBD 12 98 IPR035979 GO:0003676
Gso13g0087 352 SUPERFAMILY RNA-binding domain, RBD 94 190 IPR035979 GO:0003676
Gso13g0087 352 PANTHER OS08G0320100 PROTEIN 1 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0087 Gso-Chr13 2854398 2857253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0087 4 186 Eukaryotic Initiation Factors Gene Family AT2G23350 23.267 4.90e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0087 K12741 - gmx:100801373 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0087 13 2854398 2857253 Gso14g0058 14 529487 535851 PCT
Gso13g0087 13 2854398 2857253 Gso2g2606 2 50275464 50281597 PCT
Gso14g0058 14 529487 535851 Gso13g0087 13 2854398 2857253 PCT
Gso2g2606 2 50275464 50281597 Gso13g0087 13 2854398 2857253 PCT