Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0056 ATGGGTCGTTGCCGAGCTGCGTCGCGCCCCGGTGACGATGACCCCAAGTACAGATTCTTAGGGTTTGCTTGGATGATGGATTCGGAGATTGAAGTAGAGGAGGGATCAAAGAGAAAAAGGGCTGCTCTGAATGTAGAAAATTCAGAAACTTTACCTACTGGCCAAGGAGTAACTAATAGCAAGGTATCTCCTTATCACTGCAATTATTGTAACAAAGATATTTCGGGGAAGATTCGCATCAAGTGTGCTGTTTGTCAAGATTTTGACCTCTGCATAGAGTGCTTCTCTGTCGGTGCTGAGGTAACACCTCACAAAAGCAATCATCCTTATCGGATTATGGATAATCTGTCTTTTCCACTTATATGTCCAGATTGGAATGCGGATGAAGAGATGTTACTTCTAGAGGGTATTGAAATGTATGGATTTGGGAATTGGAATGAAGTTGCAGAATATATTGGAACAAAAAGCAAATCTCAATGTATTGACCACTATAATGCTGTATATATGAATTCACCATGTTTTCCTCTCCCTGATTTGTCTCATGTTATGGGAAAGAGCAAAGAGGAACTCTTTGCCATGATGAAGGGGCATGAAGCCAAGAAAGAATTTTCTCTAACTACAGAGCTTACTCTGAAAGAAGAACCTCCCTTTGTTGATGGAATAAACTATGAAGAATCAAAGAAGGAAGAAATCAATGATCAAACCATGTCTAGGTTAACCTCAGCATGTGGCAAAGCTTACTCAAGTACAGTTAAGAAGGCTTCCAGCGTGATCCAAAATAATGATGGAGTTAAGGTGGAAGTAGAGTCTCATGCAGATCGGAGCATTGGAGAGAAGAAACTTAAATTATCAGGGGAAGATAGGCCTTCTATGACAAATTTGAGTGGATACAGTTTTAAGCGAGAGGAATTTGATGTTGAATACGACAACGATGCAGAGCAAGTGTTGGCTGATATGGAATTTAAGGACACTGATACTGAAGCTGAATATGAAATGAAACTGCAGGTGCTCCATATCTACTCAAAAAGGTTAGATGAACGGAAGCGCAGAAAGAATTTTATACTTGAAAGAGATTTACTTTATCCTGATCCTTTTGAGAAATCTCTCTTACCTGAAGAGCTTCAAATATGTCAGCGTTACAAGGTCTTCATGCGGTTTCACTCAAAAAAAGAGCATCAAGATTTGCTAAAAAATATTATTGAAGAACACAGGCTTGTCAAAAGAATACAAGATTTACAGGAAGCTCGAATTGCGGGCTGTGTAACTGCTGCTGATGCTTATCGATTTATTGAACAAAAGAGGACAAAGGAAGCTGAACCAAGTGCCTGTAAAGAAAGTGGTCAGATTGGAACAAGTGCTAAGACATTACAGAGGCCAAATTCTCTCAAAGGAGAAGTTGATAGTAGCCCGCAGGGTCTTCAAAAGGGGACTGCAGCTTTATTTGCTGGTGCCAAGGATTCACCTCCTGCCATACAAGTCTTCACAAGGTCGCTAGAAGAGTGGGATATTAGTGGATTTGCAGGGGCTGAATTACTATCTGAATCTGAGAAAAAGCTTTGTGATGAGATCAGAATACTACCCTCACACTATCTCAACATGCTGCAGACCTTGTCATTAGAGATTTCAAAGGGCAGTGTGACCAAGAAATCCGATGCACATGCACTGTTTAAGGTAGAGCCAAGCAAGGTTGATAGAGTCTACGATATGCTTGTGACAAAAGGAGTTGTGCAAACATAA 1737 0.4059 MGRCRAASRPGDDDPKYRFLGFAWMMDSEIEVEEGSKRKRAALNVENSETLPTGQGVTNSKVSPYHCNYCNKDISGKIRIKCAVCQDFDLCIECFSVGAEVTPHKSNHPYRIMDNLSFPLICPDWNADEEMLLLEGIEMYGFGNWNEVAEYIGTKSKSQCIDHYNAVYMNSPCFPLPDLSHVMGKSKEELFAMMKGHEAKKEFSLTTELTLKEEPPFVDGINYEESKKEEINDQTMSRLTSACGKAYSSTVKKASSVIQNNDGVKVEVESHADRSIGEKKLKLSGEDRPSMTNLSGYSFKREEFDVEYDNDAEQVLADMEFKDTDTEAEYEMKLQVLHIYSKRLDERKRRKNFILERDLLYPDPFEKSLLPEELQICQRYKVFMRFHSKKEHQDLLKNIIEEHRLVKRIQDLQEARIAGCVTAADAYRFIEQKRTKEAEPSACKESGQIGTSAKTLQRPNSLKGEVDSSPQGLQKGTAALFAGAKDSPPAIQVFTRSLEEWDISGFAGAELLSESEKKLCDEIRILPSHYLNMLQTLSLEISKGSVTKKSDAHALFKVEPSKVDRVYDMLVTKGVVQT* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0056 578 SMART sant 121 170 IPR001005 -
Gso13g0056 578 SUPERFAMILY RING/U-box 62 128 - -
Gso13g0056 578 ProSiteProfiles SWIRM domain profile. 492 578 IPR007526 GO:0005515
Gso13g0056 578 ProSiteProfiles Myb-like domain profile. 125 168 IPR001005 -
Gso13g0056 578 ProSiteProfiles Zinc finger ZZ-type profile. 62 118 IPR000433 GO:0008270
Gso13g0056 578 SUPERFAMILY Homeodomain-like 118 171 IPR009057 -
Gso13g0056 578 SMART zz_5 61 106 IPR000433 GO:0008270
Gso13g0056 578 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 32 577 IPR034318 GO:0003713|GO:0006357|GO:0035065
Gso13g0056 578 MobiDBLite consensus disorder prediction 441 471 - -
Gso13g0056 578 ProSitePatterns Zinc finger ZZ-type signature. 67 94 IPR000433 GO:0008270
Gso13g0056 578 Gene3D - 57 113 IPR043145 -
Gso13g0056 578 Pfam Zinc finger, ZZ type 65 105 IPR000433 GO:0008270
Gso13g0056 578 MobiDBLite consensus disorder prediction 445 471 - -
Gso13g0056 578 Gene3D - 119 170 - -
Gso13g0056 578 SUPERFAMILY Homeodomain-like 495 577 IPR009057 -
Gso13g0056 578 CDD ZZ_ADA2 65 113 IPR041983 -
Gso13g0056 578 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 32 577 - -
Gso13g0056 578 PIRSF Txn_adaptor_ADA2 53 578 IPR016827 GO:0003713|GO:0006357|GO:0035065
Gso13g0056 578 Pfam Myb-like DNA-binding domain 124 165 IPR001005 -
Gso13g0056 578 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 125 172 IPR017930 -
Gso13g0056 578 CDD SANT 125 165 IPR001005 -
Gso13g0056 578 Gene3D - 493 577 IPR036388 -
Gso13g0056 578 ProSiteProfiles SANT domain profile. 120 172 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0056 Gso-Chr13 2038942 2057646 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0056 1 575 EF-hand Containing Proteins AT3G07740 52.551 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso13g0056 Myb_DNA-binding 6.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0056 K11314 - gmx:100779424 1091.26