Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso13g0056 | ATGGGTCGTTGCCGAGCTGCGTCGCGCCCCGGTGACGATGACCCCAAGTACAGATTCTTAGGGTTTGCTTGGATGATGGATTCGGAGATTGAAGTAGAGGAGGGATCAAAGAGAAAAAGGGCTGCTCTGAATGTAGAAAATTCAGAAACTTTACCTACTGGCCAAGGAGTAACTAATAGCAAGGTATCTCCTTATCACTGCAATTATTGTAACAAAGATATTTCGGGGAAGATTCGCATCAAGTGTGCTGTTTGTCAAGATTTTGACCTCTGCATAGAGTGCTTCTCTGTCGGTGCTGAGGTAACACCTCACAAAAGCAATCATCCTTATCGGATTATGGATAATCTGTCTTTTCCACTTATATGTCCAGATTGGAATGCGGATGAAGAGATGTTACTTCTAGAGGGTATTGAAATGTATGGATTTGGGAATTGGAATGAAGTTGCAGAATATATTGGAACAAAAAGCAAATCTCAATGTATTGACCACTATAATGCTGTATATATGAATTCACCATGTTTTCCTCTCCCTGATTTGTCTCATGTTATGGGAAAGAGCAAAGAGGAACTCTTTGCCATGATGAAGGGGCATGAAGCCAAGAAAGAATTTTCTCTAACTACAGAGCTTACTCTGAAAGAAGAACCTCCCTTTGTTGATGGAATAAACTATGAAGAATCAAAGAAGGAAGAAATCAATGATCAAACCATGTCTAGGTTAACCTCAGCATGTGGCAAAGCTTACTCAAGTACAGTTAAGAAGGCTTCCAGCGTGATCCAAAATAATGATGGAGTTAAGGTGGAAGTAGAGTCTCATGCAGATCGGAGCATTGGAGAGAAGAAACTTAAATTATCAGGGGAAGATAGGCCTTCTATGACAAATTTGAGTGGATACAGTTTTAAGCGAGAGGAATTTGATGTTGAATACGACAACGATGCAGAGCAAGTGTTGGCTGATATGGAATTTAAGGACACTGATACTGAAGCTGAATATGAAATGAAACTGCAGGTGCTCCATATCTACTCAAAAAGGTTAGATGAACGGAAGCGCAGAAAGAATTTTATACTTGAAAGAGATTTACTTTATCCTGATCCTTTTGAGAAATCTCTCTTACCTGAAGAGCTTCAAATATGTCAGCGTTACAAGGTCTTCATGCGGTTTCACTCAAAAAAAGAGCATCAAGATTTGCTAAAAAATATTATTGAAGAACACAGGCTTGTCAAAAGAATACAAGATTTACAGGAAGCTCGAATTGCGGGCTGTGTAACTGCTGCTGATGCTTATCGATTTATTGAACAAAAGAGGACAAAGGAAGCTGAACCAAGTGCCTGTAAAGAAAGTGGTCAGATTGGAACAAGTGCTAAGACATTACAGAGGCCAAATTCTCTCAAAGGAGAAGTTGATAGTAGCCCGCAGGGTCTTCAAAAGGGGACTGCAGCTTTATTTGCTGGTGCCAAGGATTCACCTCCTGCCATACAAGTCTTCACAAGGTCGCTAGAAGAGTGGGATATTAGTGGATTTGCAGGGGCTGAATTACTATCTGAATCTGAGAAAAAGCTTTGTGATGAGATCAGAATACTACCCTCACACTATCTCAACATGCTGCAGACCTTGTCATTAGAGATTTCAAAGGGCAGTGTGACCAAGAAATCCGATGCACATGCACTGTTTAAGGTAGAGCCAAGCAAGGTTGATAGAGTCTACGATATGCTTGTGACAAAAGGAGTTGTGCAAACATAA | 1737 | 0.4059 | MGRCRAASRPGDDDPKYRFLGFAWMMDSEIEVEEGSKRKRAALNVENSETLPTGQGVTNSKVSPYHCNYCNKDISGKIRIKCAVCQDFDLCIECFSVGAEVTPHKSNHPYRIMDNLSFPLICPDWNADEEMLLLEGIEMYGFGNWNEVAEYIGTKSKSQCIDHYNAVYMNSPCFPLPDLSHVMGKSKEELFAMMKGHEAKKEFSLTTELTLKEEPPFVDGINYEESKKEEINDQTMSRLTSACGKAYSSTVKKASSVIQNNDGVKVEVESHADRSIGEKKLKLSGEDRPSMTNLSGYSFKREEFDVEYDNDAEQVLADMEFKDTDTEAEYEMKLQVLHIYSKRLDERKRRKNFILERDLLYPDPFEKSLLPEELQICQRYKVFMRFHSKKEHQDLLKNIIEEHRLVKRIQDLQEARIAGCVTAADAYRFIEQKRTKEAEPSACKESGQIGTSAKTLQRPNSLKGEVDSSPQGLQKGTAALFAGAKDSPPAIQVFTRSLEEWDISGFAGAELLSESEKKLCDEIRILPSHYLNMLQTLSLEISKGSVTKKSDAHALFKVEPSKVDRVYDMLVTKGVVQT* | 579 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso13g0056 | 578 | SMART | sant | 121 | 170 | IPR001005 | - | |
Gso13g0056 | 578 | SUPERFAMILY | RING/U-box | 62 | 128 | - | - | |
Gso13g0056 | 578 | ProSiteProfiles | SWIRM domain profile. | 492 | 578 | IPR007526 | GO:0005515 | |
Gso13g0056 | 578 | ProSiteProfiles | Myb-like domain profile. | 125 | 168 | IPR001005 | - | |
Gso13g0056 | 578 | ProSiteProfiles | Zinc finger ZZ-type profile. | 62 | 118 | IPR000433 | GO:0008270 | |
Gso13g0056 | 578 | SUPERFAMILY | Homeodomain-like | 118 | 171 | IPR009057 | - | |
Gso13g0056 | 578 | SMART | zz_5 | 61 | 106 | IPR000433 | GO:0008270 | |
Gso13g0056 | 578 | PANTHER | TRANSCRIPTIONAL ADAPTER ADA2B | 32 | 577 | IPR034318 | GO:0003713|GO:0006357|GO:0035065 | |
Gso13g0056 | 578 | MobiDBLite | consensus disorder prediction | 441 | 471 | - | - | |
Gso13g0056 | 578 | ProSitePatterns | Zinc finger ZZ-type signature. | 67 | 94 | IPR000433 | GO:0008270 | |
Gso13g0056 | 578 | Gene3D | - | 57 | 113 | IPR043145 | - | |
Gso13g0056 | 578 | Pfam | Zinc finger, ZZ type | 65 | 105 | IPR000433 | GO:0008270 | |
Gso13g0056 | 578 | MobiDBLite | consensus disorder prediction | 445 | 471 | - | - | |
Gso13g0056 | 578 | Gene3D | - | 119 | 170 | - | - | |
Gso13g0056 | 578 | SUPERFAMILY | Homeodomain-like | 495 | 577 | IPR009057 | - | |
Gso13g0056 | 578 | CDD | ZZ_ADA2 | 65 | 113 | IPR041983 | - | |
Gso13g0056 | 578 | PANTHER | TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED | 32 | 577 | - | - | |
Gso13g0056 | 578 | PIRSF | Txn_adaptor_ADA2 | 53 | 578 | IPR016827 | GO:0003713|GO:0006357|GO:0035065 | |
Gso13g0056 | 578 | Pfam | Myb-like DNA-binding domain | 124 | 165 | IPR001005 | - | |
Gso13g0056 | 578 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 125 | 172 | IPR017930 | - | |
Gso13g0056 | 578 | CDD | SANT | 125 | 165 | IPR001005 | - | |
Gso13g0056 | 578 | Gene3D | - | 493 | 577 | IPR036388 | - | |
Gso13g0056 | 578 | ProSiteProfiles | SANT domain profile. | 120 | 172 | IPR017884 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso13g0056 | Gso-Chr13 | 2038942 | 2057646 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso13g0056 | 1 | 575 | EF-hand Containing Proteins | AT3G07740 | 52.551 | 0.0 | 564 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB-related | Gso13g0056 | Myb_DNA-binding | 6.9e-12 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso13g0056 | K11314 | - | gmx:100779424 | 1091.26 |