Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0048 ATGGACAACGCAGCTGCTGAACTTCAAAGTGAGGCAGCAGATCCTGCTCTTCTTCTCCGCCATCAGACTTGTGCTGGAAATGGGATTGGTGACAGTACCTCCTTGATTCCAGAATCCTCCAGAAGACCAAGCCTCTCCTCTCTGCAAATACCAGCAAGGTCAGTGGAAAATGCATTATCATCTTTTAACAAGACAGATGGTCCTACATTGATATCAAGTCCAGGTTCCAGTAGAGGGCTACCCCCAAGGCCAAATTCAGCCAGTGCCATCAAGTCCACCATGAGAACTTTACTCTCTGAGAGGAGCTTTAGGGCTAAGAATTCTTCACAGGATAGTGAAAGGACTGTTCTGATTGTTCCTGATGCCTCACCATCTGATGGTCCTGTGGATAATAAGCCTTCGACTTCGCGGTCCCTTTCTCTTAACAAGTTTTTGTTCGCTTCTTCAACCAAAGCAGGACATTCGTTGCCGGTTACCCCAACTGCAAATTCAGGTGTAGAGAATGTACATGGAAGACATCTAGGGTGTGATTCTGATTTAAGTAAAGTGAAAGTAAATCAGCACATGACTCGATCTGTTTCGGTTCCAGTTAATATCAAAACTGCTAATTTAAGGCATACAGATTCTAGAAGGCTGGTTCGTGTAATTTCTGTAAGATCACTTCCAGGCACTAGTGGTGGCATTTCAGCTGACAATGCTTTGGGATCAGAGATTGTCAATGAAGATGCTTCTGAGGATATTCCGGAGGAAGATGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGTGGAAGGAGGGAATACTCTTAGGATGGAATGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAGACCTGTGATGTCTGCAAGCAGGAAGTCCAAAACCTTCCAGTAACACTCTTGAAAATTTCTAATCCCCAAACTGTTACTCGGCAGCCATTGAATGCACCAGAACCACAACAGAGAGAAGTAACTTCTTACAGGATATGGCAGGATGTATCGGTACTTGTCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTTGAGGAGCTACTGGTTTCAGTTTTGGGCACTCGTGCTCTTGCCATTTCATTACCTTTCTCCTGTGTTTTGGGTCTTCTTTCATCTATGATTGCTTCAACCATGGTGAGCGGGAGTTACATGTGGGCTTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGTTTGCTCATGTGTTTTATACTATACTTAATGTTAATGCCATCCTCTCAGTTCTTCTCTCCTCATTCACTGGATTTGGGATTGCAATCAGTTTGAATACTCTACTAATGGAGTATGTTAGGTGGAGAACAAGAAGACTGATTCAAGCTTCTATGACACAATAG 1401 0.4347 MDNAAAELQSEAADPALLLRHQTCAGNGIGDSTSLIPESSRRPSLSSLQIPARSVENALSSFNKTDGPTLISSPGSSRGLPPRPNSASAIKSTMRTLLSERSFRAKNSSQDSERTVLIVPDASPSDGPVDNKPSTSRSLSLNKFLFASSTKAGHSLPVTPTANSGVENVHGRHLGCDSDLSKVKVNQHMTRSVSVPVNIKTANLRHTDSRRLVRVISVRSLPGTSGGISADNALGSEIVNEDASEDIPEEDAVCRICLVELVEGGNTLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQEVQNLPVTLLKISNPQTVTRQPLNAPEPQQREVTSYRIWQDVSVLVLVSMLAYFCFLEELLVSVLGTRALAISLPFSCVLGLLSSMIASTMVSGSYMWAYACFQFAIVILFAHVFYTILNVNAILSVLLSSFTGFGIAISLNTLLMEYVRWRTRRLIQASMTQ* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0048 466 PANTHER OS02G0165000 PROTEIN 7 464 - -
Gso13g0048 466 CDD RING_CH-C4HC3_MARCH 254 302 - -
Gso13g0048 466 ProSiteProfiles Zinc finger RING-CH-type profile. 246 308 IPR011016 GO:0008270
Gso13g0048 466 MobiDBLite consensus disorder prediction 60 88 - -
Gso13g0048 466 SUPERFAMILY RING/U-box 250 305 - -
Gso13g0048 466 SMART ringv_2 253 302 IPR011016 GO:0008270
Gso13g0048 466 MobiDBLite consensus disorder prediction 102 116 - -
Gso13g0048 466 PANTHER OS02G0165000 PROTEIN 7 464 - -
Gso13g0048 466 MobiDBLite consensus disorder prediction 30 49 - -
Gso13g0048 466 MobiDBLite consensus disorder prediction 102 136 - -
Gso13g0048 466 Pfam RING-variant domain 254 301 IPR011016 GO:0008270
Gso13g0048 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 310 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0048 Gso-Chr13 1587305 1596659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0048 237 360 C3H Transcription Factor Family AT2G37950 34.109 3.27e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0048 - - gmx:100779396 848.195