Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0028 ATGAGTCTTCCACAAACTGCAACTAGCCCTCCTCCACATCTGTATCCACAGGAACTTCAGCTGAAGCTTTACCAAACCTTCATATTCTCAATTCCAATACTCTTCTCCATCATTCTCTTTCTCTTGTTTTACTTGTTCTACCTCAAGAGAAGGGCTTCCTCTCTCTCTTCCACTCCTCACTTGCTTCCTAGGACCATTGCCAATCCACCCACCACCTCTCCCTATCATTCCTCACCTTGTCGTTTGGATCTGACCCTCCATTTCCTGGATAAACTTCCAAGAATTTTGTTTGATGAGGATTTGCTAGCAAGGGATTCACTATGTTGTGTATGCCTGGGGGAATTTGAGCTGAAGGAAGAGTTGGTACAGATACCTTATTGCAAGCACGTGTTCCACTTGGAATGCATACATCATTGGCTGCAATCAAACAGCACTTGTCCACTTTGTAGATGTTCCATCATCCCCACTACCAAGTTCCTCAACCCAGCACCGCCTATTAACATTATATCAACAGACCCACCCCAGCAGCATGGTGCTATCATTTCGGACTTCCCATTACAAATTCTATCATTGCCACCTCAGTCACAAGACCATCAAGAAGTTGTTGGTGCTTCCTCAAATGCTGCTAATTTGTCAAGGGAATGA 645 0.445 MSLPQTATSPPPHLYPQELQLKLYQTFIFSIPILFSIILFLLFYLFYLKRRASSLSSTPHLLPRTIANPPTTSPYHSSPCRLDLTLHFLDKLPRILFDEDLLARDSLCCVCLGEFELKEELVQIPYCKHVFHLECIHHWLQSNSTCPLCRCSIIPTTKFLNPAPPINIISTDPPQQHGAIISDFPLQILSLPPQSQDHQEVVGASSNAANLSRE* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0028 214 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 3 166 - -
Gso13g0028 214 Pfam Ring finger domain 108 150 IPR001841 -
Gso13g0028 214 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Gso13g0028 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 155 IPR013083 -
Gso13g0028 214 MobiDBLite consensus disorder prediction 195 214 - -
Gso13g0028 214 SUPERFAMILY RING/U-box 87 160 - -
Gso13g0028 214 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 3 166 - -
Gso13g0028 214 SMART ring_2 108 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0028 Gso-Chr13 785887 788357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0028 1 214 C3H Transcription Factor Family AT4G10150 32.420 1.34e-35 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0028 K19039 - gmx:100813129 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0510 20 25761550 25764000 Gso13g0028 13 785887 788357 GST