Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0019 ATGGGAGGGTACTCTACGAACCCCGCGGACTACAAGCTTCTAGAAGAAGTTGGTTATGGAGCCACCGGCACCGTCTACAGAGCGATCTATCTCCCCTTCAACCAACTGGTGGCCATCAAGTCCTTCGATCTCGATCGCTGCAACGTCAATCTCGACGACCTGCGCAGGGAGGCCCAAACCATGAGCCTCATCGACCACCCCAACGTGGTGAGGGCGCTCTGCTCCTTCGCCGTGGACCGGAGCCTCTGGGTGGTCATGCCCTTCATGGACCAGGGCTCCTGCCTCCACCTCATCAAGATAGCTTACTCCCACGGCTTCCATGAAGACGTTATCGGATCCATCCTCAAGGAGACTCTCAAGGCCCTCCACTACCTCCACCGCCACGGCCACATTCACGGCGACGTCAAGGCCGGTAACATTCTACTCGACACCTCCGCCTCCGTCAGGCTCGCCGACTTCGGCGTCTCCGCTTGCTTGTACGACAACGCCGGCGACCGTCACCGTTCCAGAAACACTTTTGTTGGAACCCCTTGCTGGATGGCTCCTGAGATGCTGCAACCTGGAAGTGGCTATAATTCCAAGGCCGATATTTGGTCTTTTGGGATTACGGCACTTGAGTTGGCTCATGGCCATGCTCCATTTTCAAAATATCCTCCAATGAGGGTTCTCCTAATGACAATACAGAATGCCCCTCCTGGACTTGATTATGATCGAGATAAAAAGTTCTCTAAGTATTTTAAGGAAATGGTTGCTATGTGCCTGGTAAAAGATCAAACAAAAAGGCCATCAGCAGAGAAGTTACTGAAACATTCCTTCTTCAAACATGCTAAGCCTCCCGAGCTCTCTGTAAAGAAATTGTTTGCTGACTTACCACCTCTTTGGAATCGTGTAAAAGCCCTCCAGCTCAAAGATGCAGCACAACTAGCAGTGAAGAAAATGCCTTCTACAGAAGAAGAGGCAATATCTCGGAGTCAATATCAACGAGGAGTTAGCGCGTGGAATTTTGATATTGATGATTTGAAAGCTCAAGCTTCATTGGTGAGGGATGATGATGATATTGCAGAGATGAGGGAAGAAGCTGAAAAGAAATTTTTTACTAATTACAAGGCCATTGCAATTGATTCCCAGTCTGGTACTGTCAAAATGAATTCAGAGAAATCACCACAGAATAAAATCACATCACAGGTAGGTGCTTTTGACATAAAACAGACTGAGCAGGATGAATACTTGAACAAAAAGGAGAAGAATCCCAAAAGTGATCTCCAGGAACCTGGATTGCCCAAAAATATTATTTGGAAGAGAAATGGGTCAATTACGGAGGCAACAACATCTACTCTAGAGAAAGATATAGGTATGTGCAAAATCAAAGGTCAATCCAGGAAAATCCGTCAAACCCAAAGTGGACCGCTGTTGCCAGGCACTGTTCTCAGTCATTCTGCATTAGAAAGGGGACGAACATTAGAAAGGCTTGAGAATGGAAATCAGTTACTGGGTGAGAAAAATAACCATGAAGCGCGACGAGCGCCAAGTTTTAGTGGTCCATTGATGCTTCCAATGCGAGCTTCAGCAAATAGTTTATCGGCTCCAATAAAGTCTTCTGGAGGATTCATAGATTCCTTGGATGACAAGTCTAAGGCTAATCTAGTGCAAATTAAAGGGCGATTCTCTGTGACATCAGAAAATTTAGATCTTGTGAAGGATATTCCCGTAAGTTCAGTTTCACGCCGATCTTCACAGGGATCAGTATCACCACTGCAGAAATCTGCCAGTGTTAGTGATTGGATGTTCGATTCCAAACAAATGTCCACCAAAGATTCTATCACCAACGGTATCTCTGCATCATTTCTTACAACTCACCTTCAAAATCTTTTACAGCAAACATCTATTCAACAAGATCTTATAATGAATCTGTTAAATAGCTTGCAATCTGCTGAAGCAATTGAAGTTTCACAGAATGGGAAGTTGCCACCATTACCTCGCAGTTCAGAAATCAATGGAAGTGTTGATACAGCAGCTTCAGAGAGGGAACGTCTTCTGCTGCTCAAAATTTCAGAGCTTCAGACTCAGATGATCACTTTGACTGGTGAGCTGACAGCTGAGAAGTTAAAACACATGCAGTTGCAACAACAGCTAATTCTCTACAGTCAGGAACAAAATAGGGACAAGAGAGATGAAGTTGCATGA 2184 0.4542 MGGYSTNPADYKLLEEVGYGATGTVYRAIYLPFNQLVAIKSFDLDRCNVNLDDLRREAQTMSLIDHPNVVRALCSFAVDRSLWVVMPFMDQGSCLHLIKIAYSHGFHEDVIGSILKETLKALHYLHRHGHIHGDVKAGNILLDTSASVRLADFGVSACLYDNAGDRHRSRNTFVGTPCWMAPEMLQPGSGYNSKADIWSFGITALELAHGHAPFSKYPPMRVLLMTIQNAPPGLDYDRDKKFSKYFKEMVAMCLVKDQTKRPSAEKLLKHSFFKHAKPPELSVKKLFADLPPLWNRVKALQLKDAAQLAVKKMPSTEEEAISRSQYQRGVSAWNFDIDDLKAQASLVRDDDDIAEMREEAEKKFFTNYKAIAIDSQSGTVKMNSEKSPQNKITSQVGAFDIKQTEQDEYLNKKEKNPKSDLQEPGLPKNIIWKRNGSITEATTSTLEKDIGMCKIKGQSRKIRQTQSGPLLPGTVLSHSALERGRTLERLENGNQLLGEKNNHEARRAPSFSGPLMLPMRASANSLSAPIKSSGGFIDSLDDKSKANLVQIKGRFSVTSENLDLVKDIPVSSVSRRSSQGSVSPLQKSASVSDWMFDSKQMSTKDSITNGISASFLTTHLQNLLQQTSIQQDLIMNLLNSLQSAEAIEVSQNGKLPPLPRSSEINGSVDTAASERERLLLLKISELQTQMITLTGELTAEKLKHMQLQQQLILYSQEQNRDKRDEVA* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0019 727 Pfam Protein kinase domain 11 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0019 727 SMART serkin_6 11 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0019 727 SUPERFAMILY Protein kinase-like (PK-like) 10 328 IPR011009 -
Gso13g0019 727 Gene3D Phosphorylase Kinase; domain 1 2 88 - -
Gso13g0019 727 Gene3D Transferase(Phosphotransferase) domain 1 92 325 - -
Gso13g0019 727 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Gso13g0019 727 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 3 718 - -
Gso13g0019 727 ProSiteProfiles Protein kinase domain profile. 11 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0019 727 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 718 - -
Gso13g0019 727 CDD STKc_OSR1_SPAK 10 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0019 Gso-Chr13 626270 635360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0019 3 715 MAP Kinase Kinase Kinase Kinase AT4G24100 62.396 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Gso13g0019 Pkinase 7.5e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0019 - - gmx:100809903 1407.51