Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g2040 ATGTCGCTGAATATGAAAACCCTAACCCAAGCATTGGCGAAGACCGCGGCGGTGATCGAGAAGACAGTGCAGACGACGGTGCAGGAGGTGACGGGCCCGAAGGCACTTCAGGACTACGAGCTGCTCGACCAGATCGGCTCCGCGGGGCCCGGGCTCGCCTGGAGGCTCTATTCGGGCCGGTCCCGTGATCCCTCGCGGCAGCACCAGTATCCGGTGGTGTGTGTGTGGGTCTTGGACAAGCGCACTCTTTCCGAGGCCCGAATGCGCGCGGGCCTCACCAAGGCCGCTGAGGATTCCTTTCTAGATTTGATTCGGATGGATGCCTCCAAGCTCGTCCGCCTCAGGCATCCCGGTGTCGTTCACGTCGTCCAGGCCCTCGACGAGAGCAAGAATGCTATGGCTATGGTCACCGAACCCTTGTTTGCTTCCGCTGCCAATACTCTTGGCATTGTCGACAATATTCTTAATCTTCCTAAAGATCTCAGGGGAATGGAAATGGGAATTTTGGAGGTAAAGCATGGTTTACTTCAGATAGCAGAATCCCTCGACTTTCTCCACAACCATGCTCATCTTATTCATCGATCTATATCACCCGAGAACATTCTGATCACCTTGAGTGGAGCTTGGAAACTGGCTGGATTTGGTTTTGCAGTTTCTGCTACTCAGACTTCTGGTGACTCATCTAATCTGCAACCCTTCCATTATGCTGAATATGATGTTGAGGACTCTATTTTGCCACTTCAGCCATCACTTAATTACACTGCTCCTGAGCTGGTGAGGAGCACTGTGTCTTCGGCTGGGTGCTCATCTGATATTTTCAGTATTGGATGCCTTGCCTACCATTTAATTGCCCGCAAGCCTTTGTTTGACTGCCACAACAATGTGAAGATGTACATGAATACCTTGACTTACTTATCCAGTGACGCATTCTCATCTATCCCATCAGAACTGGTTCCTGACTTGCAAAGGATGCTTTCTCCAAATGAGTCTTCAAGGCCAACAGCAATGGATTTTACAGGCTCACCATTTTTTAGGCATGACACTAGGTTGCGTGCTCTACGCTTCCTTGATCACATGCTTGAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCATTGTCAGATATGTGGAAAGATTTTGATTCGCGCGTATTGCGATATAAGGTCCTTCCACCACTTTGTGCAGAGCTTAGGAATGTGGTGATACAGCCAATGATTTTACCAATGGTTCTAACCATTGCAGAGTCTCAGGACAAGAATGATTTTGAGCAATCAACACTTCCAGCCCTTGTCCCTGTCCTTAGTTCTGCTGCTGGTGAGACACTATTACTGCTTGTGAAGCATGCTGAGCTTATAATAAACAAGACTAGTCAAGAACATTTAGTTTCACATGTTCTTCCAATGATTGTTCGGGCCTATGATGATACTGATGCTCGTTTGCAAGAAGAGGTCCTGAAAAAATCTGTATCCCTTGTCAAACAACTAGATGCCCAGCTCGTGAAACAAGTGGTTTTGCCCCGTGTTCATGGATTAGCACTTAAAACAACAGTTGCGACGGTTAGAGTCAATGCGCTGTTGTGCCTAGGAGACATGGTTAATCAACTTGATAAACATGCTGTCTTGGACATCTTGCAAACTATTCAACGCTGTACTGCTGTTGACCGCTCCCCTCCAACCCTTATGTGTACCCTAGGGGTTGCAAATTCTATTTTCAAGCAGTATGGAGTAGAATTTGTAGCTGAGCATGTTCTTCCATTGCTTATACCCCTGCTGACTGCTCAACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCACAAAATAGAAGAGAAGCGAGGAGTGGCTGTGACTGATTCTGGAACGCCAGAGATAAAACTATCTCCCGTGGTTAATGGCCTTCAATCTGAAGCCACGCGGACAAGCAGCAGCTCTGTACCTGCTTCAACAAAAAACAGCTCTTGGGATGAAGATTGGGGTCCCAAACCAAAGGGCACTGCCTCTTCGATCCAGAATTCTATTGATGCAACCAGTCAATCTATGGCAGGCAACCCTGTGGATCAAGTAACATCTTTACAAAAGCATTTGTCCTTAGCGGCTTTATCTGCTAAGCAAACAGCCAAGTCATGTCCGTCAGTGGATGTAGAATGGCCACCTCGTGCATCTTCTGGTGTTACCCCACAATTTGGTGATACTGAAAGGCAGACAATAGCAGCAGGAACTTCATCCACATCTAATCTTGAATCTGATGATCCTTTTGCTGATTGGCCTCCGCATCCTAATGGCTCAGTATCAGGTGGATCTGGAATATCCAACAATGGTACTTTAGGAATGCCACTAAACAAAGTTGGGTTTAATTCAATGACAAGCACTTCAAGCAATATGGCTCCCCAAACTAGCAACAGTTGGCCTGTTAATTCCCAAAGTTCTGCCGAGTCCATTAGTTTGAACTCAAGGAGTGCTAGTTCAACAACGGGTAGCCTGAATACTGGTGGCCTTGGACAACAGAAATCTCTTGGGTTCCTAAAACAAAGCCAAGCTTTTCCAGCATCGAATGTTTCATATAATAATGTTCAGTCAACAGCAACAGATCTTGGATCAATATTTTCTTCCAACAAGAATGAACAAATTGCACCTAAACTTGCACCACCCCCTTCAACCACTGTGGGTAGAGGACGAGGAAGAGGGAGGGGAGCTGCTTCAACCACTCGGTCCTCTCATACCAAGTCACATGCTGAGCAGCCACCCCTTTTGGATTTGTTGTGA 2787 0.4657 MSLNMKTLTQALAKTAAVIEKTVQTTVQEVTGPKALQDYELLDQIGSAGPGLAWRLYSGRSRDPSRQHQYPVVCVWVLDKRTLSEARMRAGLTKAAEDSFLDLIRMDASKLVRLRHPGVVHVVQALDESKNAMAMVTEPLFASAANTLGIVDNILNLPKDLRGMEMGILEVKHGLLQIAESLDFLHNHAHLIHRSISPENILITLSGAWKLAGFGFAVSATQTSGDSSNLQPFHYAEYDVEDSILPLQPSLNYTAPELVRSTVSSAGCSSDIFSIGCLAYHLIARKPLFDCHNNVKMYMNTLTYLSSDAFSSIPSELVPDLQRMLSPNESSRPTAMDFTGSPFFRHDTRLRALRFLDHMLERDNMQKSEFLKALSDMWKDFDSRVLRYKVLPPLCAELRNVVIQPMILPMVLTIAESQDKNDFEQSTLPALVPVLSSAAGETLLLLVKHAELIINKTSQEHLVSHVLPMIVRAYDDTDARLQEEVLKKSVSLVKQLDAQLVKQVVLPRVHGLALKTTVATVRVNALLCLGDMVNQLDKHAVLDILQTIQRCTAVDRSPPTLMCTLGVANSIFKQYGVEFVAEHVLPLLIPLLTAQQLNVQQFAKYMLFVKDMLHKIEEKRGVAVTDSGTPEIKLSPVVNGLQSEATRTSSSSVPASTKNSSWDEDWGPKPKGTASSIQNSIDATSQSMAGNPVDQVTSLQKHLSLAALSAKQTAKSCPSVDVEWPPRASSGVTPQFGDTERQTIAAGTSSTSNLESDDPFADWPPHPNGSVSGGSGISNNGTLGMPLNKVGFNSMTSTSSNMAPQTSNSWPVNSQSSAESISLNSRSASSTTGSLNTGGLGQQKSLGFLKQSQAFPASNVSYNNVQSTATDLGSIFSSNKNEQIAPKLAPPPSTTVGRGRGRGRGAASTTRSSHTKSHAEQPPLLDLL* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g2040 928 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 7 928 - -
Gso12g2040 928 Gene3D Phosphorylase Kinase; domain 1 35 138 - -
Gso12g2040 928 MobiDBLite consensus disorder prediction 771 838 - -
Gso12g2040 928 MobiDBLite consensus disorder prediction 639 677 - -
Gso12g2040 928 Gene3D Transferase(Phosphotransferase) domain 1 160 347 - -
Gso12g2040 928 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 928 - -
Gso12g2040 928 Gene3D - 348 621 IPR011989 -
Gso12g2040 928 MobiDBLite consensus disorder prediction 881 928 - -
Gso12g2040 928 MobiDBLite consensus disorder prediction 712 838 - -
Gso12g2040 928 SUPERFAMILY ARM repeat 345 608 IPR016024 -
Gso12g2040 928 SUPERFAMILY Protein kinase-like (PK-like) 34 347 IPR011009 -
Gso12g2040 928 Pfam Protein kinase domain 104 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g2040 928 ProSiteProfiles Protein kinase domain profile. 39 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g2040 928 MobiDBLite consensus disorder prediction 639 663 - -
Gso12g2040 928 CDD PK_SCY1_like 45 346 - -
Gso12g2040 928 SMART serkin_6 39 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g2040 928 MobiDBLite consensus disorder prediction 732 757 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g2040 Gso-Chr12 44470281 44481992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g2040 104 349 CBL-interacting serine-threonine protein kinases AT2G26980 24.400 1.20e-10 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL2 Gso12g2040 Pkinase 1.2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g2040 K17541 - gmx:100796211 1764.59