Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g2038 ATGGAATCCTGCAATTGTATTGACCCACAAGTGCCAGCTGATGACTTATTGATGAAATACCAATATATCTCTGATTTCTTCATTGCCCTTGCTTATTTCTCAATCCCTTTGGAGCTTATCTACTTTGTTAAGAAATCAGCAGTATTTCCATATAGATGGGTCCTTGTTCAGTTTGGTGCTTTTATAGTTTTATGTGGAGCAACACATCTAATTAATTTATGGACCTTTAGAATTCATTCAAGAACTGTGGCTGTTGTAATGACCACTGCTAAGGTTTTAACTGCTGTGGTATCATGTGCAACTGCCCTCATGCTGGTACATATTATTCCTGATTTATTAAGTGTTAAAACTAGGGAATTATTTTTGAAGAACAAGGCTGCAGAGCTTGATAGAGAAATGGGCCTGATTCGCACACAAGAAGAAACTGGTCGACATGTTAGGATGTTGACTCATGAGATTAGAAGCACTCTTGATAGACACACAATATTGAAAACGACTCTTGTTGAATTAGGTAGAACTTTGGCACTAGAGGAATGTGCGTTATGGATGCCAACACGAACTGGTTTGGAGCTTCAACTCTCTTACACATTGCGACAGCAGAACCCAGTTGGATACACAGTACCCATTCATCTTCCTGTTATCAATCAAGTATTTAGTAGCAACAGGGCAGTAAAAATTTCACCTAATTGTCCAGTTGCTAGATTACGACCTTATGCTGGAAAATACATGCCTGGGGCAGTAGTAGCTGTTCGAGTTCCTCTCCTACATCTTTCTAATTTCCAAATATATGATTGGCCTGAGGTTTCAACAAGAAGTTATGCTTTGATGGTTTTGATGCTTCCATCAGATAGTGCTAGACAATGGCATGTGCACGAGTTAGAACTGGTTGAGGTAGTTGCTGACCAGGTAGCTGTTGCTCTTTCACATGCTGCAATCTTAGAAGAGTCAATGAGGGCAAGGGATCAGCTCATCGAGCAGAATGTTGCATTAGATCTAGCAAGAAGAGAAGCAGAAACTGCAATTCGTGCTCGTAATGACTTTTTGGCAGTTATGAACCATGAGATGAGAACTCCCATGCATGCAGTTATTGCACTCTCTTCATTACTACAGGAAACAGATTTGACAGCTGAGCAACGACTGATGGTGGAGACAATATTGAAAAGCAGCAATTTGTTGGCTACCCTCATCAATGACGTTTTGGATCTTTCACGGCTTGAAGATGGCAGTCTTCAACTTGAAGCAGCAACATTTAACCTCCATTCTTTGTTCAGAGAGGTCCTTAACTTGATTAAGCCTGTTGCATCTGTTAAAAAGTTATCACTCACTTCACATGTAGCCTCAGATTTGCCAATGTATGCCATTGGTGATGAAAAACGTCTCATGCAAACTATTCTGAATGTTGTTGGTAATGCTGTGAAGTTCTCAAAAGAGGGTTGCATTTCCATCACTGCTTTCGTTGCAAAGCCTGAATCCTTTAGAGATGCTAGAATTCCTGACTTTCTTCCAGTGCCAAGTGATAACCACTTTTATTTGCGAGTACAGGTAAAAGATTCAGGATCAGGAATTAATCCACAAGATATCCCGAAGTTATTCACTAAGTTTGCACAAAACCAATCATTAACAAGAAATCCTGCTGGAAGTGGACTTGGCCTGGCAATTTGTAGGAGGTTCGTAAATCTTATGGAAGGGCATATTTGGGTTGAAAGCGAAGTACCAGGAAATCATGGATCTACAAACTTTGCTGGGCTCAAAGTTCTTGTCATGGATGACAATGGGGTTAGCAGGACAGTAACAAAAGGACTTCTTATGCATTTAGGATGTGATGTAACAACTGCAAGCTCAAGTGAAGAATGTCTGCGTGTTGTTTCTCTGGAACATGAAGTGGTCTTCATGGATGTTTGTACAGGGTTAGATGGTTATGAACTTGCAGTCCGTATACATGAGAAGTTTACGAAGCATCAAGATAGACCACTGATAGTTGCTCTTACTGGAAACACCAAAAAGGTAACAAAAGAGAACTGTATGAGGGTTGGTATGGATGGCCTTATATTGAAACCTGTTTCTGTTGACAAAATGAGGGGTGTTTTATCAGAACTATTGGAGCGCCGAGTTCTGTTCGAAAGTGTTTAA 2130 0.4033 MESCNCIDPQVPADDLLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFRIHSRTVAVVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIHLPVINQVFSSNRAVKISPNCPVARLRPYAGKYMPGAVVAVRVPLLHLSNFQIYDWPEVSTRSYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDQLIEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAVIALSSLLQETDLTAEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLEAATFNLHSLFREVLNLIKPVASVKKLSLTSHVASDLPMYAIGDEKRLMQTILNVVGNAVKFSKEGCISITAFVAKPESFRDARIPDFLPVPSDNHFYLRVQVKDSGSGINPQDIPKLFTKFAQNQSLTRNPAGSGLGLAICRRFVNLMEGHIWVESEVPGNHGSTNFAGLKVLVMDDNGVSRTVTKGLLMHLGCDVTTASSSEECLRVVSLEHEVVFMDVCTGLDGYELAVRIHEKFTKHQDRPLIVALTGNTKKVTKENCMRVGMDGLILKPVSVDKMRGVLSELLERRVLFESV* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g2038 709 Pfam GAF domain 158 307 IPR003018 GO:0005515
Gso12g2038 709 ProSiteProfiles Response regulatory domain profile. 584 700 IPR001789 GO:0000160
Gso12g2038 709 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 455 578 IPR003594 -
Gso12g2038 709 SMART REC_2 583 696 IPR001789 GO:0000160
Gso12g2038 709 Gene3D - 582 709 - -
Gso12g2038 709 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 397 573 IPR036890 -
Gso12g2038 709 PIRSF Ethylen_sen_hybr_HK 1 579 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Gso12g2038 709 PIRSF Ethylen_sen_hybr_HK 570 707 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Gso12g2038 709 SMART gaf_1 158 317 IPR003018 GO:0005515
Gso12g2038 709 SUPERFAMILY GAF domain-like 161 310 - -
Gso12g2038 709 PANTHER ETHYLENE RECEPTOR 1-LIKE 2 573 - -
Gso12g2038 709 PANTHER ETHYLENE RECEPTOR 1-LIKE 571 706 - -
Gso12g2038 709 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 2 573 - -
Gso12g2038 709 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 571 706 - -
Gso12g2038 709 Pfam His Kinase A (phospho-acceptor) domain 344 408 IPR003661 GO:0000155|GO:0007165
Gso12g2038 709 SUPERFAMILY CheY-like 579 702 IPR011006 -
Gso12g2038 709 Pfam Response regulator receiver domain 585 693 IPR001789 GO:0000160
Gso12g2038 709 SMART HKATPase_4 455 591 IPR003594 -
Gso12g2038 709 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 329 409 IPR036097 GO:0000155|GO:0007165
Gso12g2038 709 SMART HisKA_10 343 408 IPR003661 GO:0000155|GO:0007165
Gso12g2038 709 CDD REC_ETR-like 583 696 - -
Gso12g2038 709 PRINTS Bacterial sensor protein C-terminal signature 511 525 IPR004358 GO:0016310|GO:0016772
Gso12g2038 709 PRINTS Bacterial sensor protein C-terminal signature 529 539 IPR004358 GO:0016310|GO:0016772
Gso12g2038 709 PRINTS Bacterial sensor protein C-terminal signature 545 563 IPR004358 GO:0016310|GO:0016772
Gso12g2038 709 CDD HisKA 341 404 IPR003661 GO:0000155|GO:0007165
Gso12g2038 709 ProSiteProfiles Histidine kinase domain profile. 350 587 IPR005467 -
Gso12g2038 709 Gene3D - 136 308 IPR029016 -
Gso12g2038 709 Gene3D - 309 407 - -
Gso12g2038 709 Gene3D - 408 581 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g2038 Gso-Chr12 44455113 44460829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g2038 1 709 Miscellaneous Gene Families AT1G66340 79.245 0.0 1182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso12g2038 GAF 2.6e-15 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g2038 K14509 - gmx:100795340 1354.73