Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g2031 ATGGAGCCATCGGATCCAACTCACGCTTCTCCAGATGAATTTGATTCTTTGTTGGAAGAACTAGAATCTGCCCATGAACATGTGCAGGACCGTATTAGGCGCCTTGAAGCGATAACTTCCAGAACCAGGCAGTATTCGAGTTGGCCGCTGTTTCACACTCCAATCCAAATAACCAACTCTACTGGACAAACCAGCGCGCTAGCTGATGCTCGTGAAGAAGAAATGCCGAGCCGGGAAGTTGAGGAAAGAGTCGTTGAAAGTGGGAGAGGGTTCAAAAGGAAAGGTGCCCATTTAGTAGCTAAGGCATTGGGGAGGATTGAAACAGATGCCAATAAGGAAGGGGGAAGCACTGGAAATTTCTATGATTGCAATATATGTTTAGACAGGGCAAGAGATCCTGTGTTGACCTGCTGTGGTCATTTGTTTTGTTGGCCATGCTTCTATCAGGTGCAAATTGTCTATTCAAATGCAAGGGAATGCCCTGTTTGTAAAGGAGAGGTCACTGAAACTGGCATTTTTCCGATTTATGGCAATTCAAGTGCCGATGGCAGTTGTGAGTCAGGATTGAAAGGAGCTGGTTTGAGAATTCCTCCTCGACCCGCTGCACCCAGAATTGAGAGTTTTAGGCAGCAGCTAATAAGTCAGGGAGCATCTTCTTCTGTAATCCTAAATATCCGGCGGTTTCATCACCTTATTGGTGGGTTAGGAGCTCGAGTTCAGTCACAAAACCCCAATGCTGCAACTGATAGGAATAATGGTTTGCTCGCTCAATCTCGCCCGCCATCAAGCAATGATCGAGGTACTGGTTCCTCTCAGACTCCAATTTCAACCTTGTTAGTGCAAGGAGCTGCTTCATTTTCATCCCTTTCATCAGCATTAAATTCTGCGATGGATTCTGCTGAAAGATTAGTTGAGGACCTTGAGTCATATTTTCATAATCACCAGACAAATGGTGTCAATACAAGTTCAACTCATAATGGGAATGTTGCTGCAACTGATTCCACACCTGCAGCTTCTACATCTCCTTTTAGTAGGAATGTTGACACCACTGCTAATATTGGCTCAGAAATTCAGACAACAGATAATAACATACAGACTGAGACTAGTACATTGGACCCTTCTTCATCTCGCAGAGGAAGCACTCGTGTTTCAACTTCAAGACAAGTTACAAATGATCGCAGAAGGAGGTCAAGATGA 1197 0.4461 MEPSDPTHASPDEFDSLLEELESAHEHVQDRIRRLEAITSRTRQYSSWPLFHTPIQITNSTGQTSALADAREEEMPSREVEERVVESGRGFKRKGAHLVAKALGRIETDANKEGGSTGNFYDCNICLDRARDPVLTCCGHLFCWPCFYQVQIVYSNARECPVCKGEVTETGIFPIYGNSSADGSCESGLKGAGLRIPPRPAAPRIESFRQQLISQGASSSVILNIRRFHHLIGGLGARVQSQNPNAATDRNNGLLAQSRPPSSNDRGTGSSQTPISTLLVQGAASFSSLSSALNSAMDSAERLVEDLESYFHNHQTNGVNTSSTHNGNVAATDSTPAASTSPFSRNVDTTANIGSEIQTTDNNIQTETSTLDPSSSRRGSTRVSTSRQVTNDRRRRSR* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g2031 398 MobiDBLite consensus disorder prediction 241 273 - -
Gso12g2031 398 MobiDBLite consensus disorder prediction 314 398 - -
Gso12g2031 398 MobiDBLite consensus disorder prediction 314 387 - -
Gso12g2031 398 Pfam zinc-RING finger domain 123 164 IPR001841 -
Gso12g2031 398 CDD RING-HC_AtRMA_like 121 165 - -
Gso12g2031 398 SUPERFAMILY RING/U-box 122 169 - -
Gso12g2031 398 Coils Coil 18 38 - -
Gso12g2031 398 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 3 374 - -
Gso12g2031 398 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 374 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gso12g2031 398 SMART ring_2 123 163 IPR001841 -
Gso12g2031 398 ProSiteProfiles Zinc finger RING-type profile. 123 164 IPR001841 -
Gso12g2031 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 177 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g2031 Gso-Chr12 44388364 44390739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g2031 107 378 C3H Transcription Factor Family AT3G58030 32.903 2.25e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g2031 K10666 - gmx:100793230 721.079