Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso12g2031 | ATGGAGCCATCGGATCCAACTCACGCTTCTCCAGATGAATTTGATTCTTTGTTGGAAGAACTAGAATCTGCCCATGAACATGTGCAGGACCGTATTAGGCGCCTTGAAGCGATAACTTCCAGAACCAGGCAGTATTCGAGTTGGCCGCTGTTTCACACTCCAATCCAAATAACCAACTCTACTGGACAAACCAGCGCGCTAGCTGATGCTCGTGAAGAAGAAATGCCGAGCCGGGAAGTTGAGGAAAGAGTCGTTGAAAGTGGGAGAGGGTTCAAAAGGAAAGGTGCCCATTTAGTAGCTAAGGCATTGGGGAGGATTGAAACAGATGCCAATAAGGAAGGGGGAAGCACTGGAAATTTCTATGATTGCAATATATGTTTAGACAGGGCAAGAGATCCTGTGTTGACCTGCTGTGGTCATTTGTTTTGTTGGCCATGCTTCTATCAGGTGCAAATTGTCTATTCAAATGCAAGGGAATGCCCTGTTTGTAAAGGAGAGGTCACTGAAACTGGCATTTTTCCGATTTATGGCAATTCAAGTGCCGATGGCAGTTGTGAGTCAGGATTGAAAGGAGCTGGTTTGAGAATTCCTCCTCGACCCGCTGCACCCAGAATTGAGAGTTTTAGGCAGCAGCTAATAAGTCAGGGAGCATCTTCTTCTGTAATCCTAAATATCCGGCGGTTTCATCACCTTATTGGTGGGTTAGGAGCTCGAGTTCAGTCACAAAACCCCAATGCTGCAACTGATAGGAATAATGGTTTGCTCGCTCAATCTCGCCCGCCATCAAGCAATGATCGAGGTACTGGTTCCTCTCAGACTCCAATTTCAACCTTGTTAGTGCAAGGAGCTGCTTCATTTTCATCCCTTTCATCAGCATTAAATTCTGCGATGGATTCTGCTGAAAGATTAGTTGAGGACCTTGAGTCATATTTTCATAATCACCAGACAAATGGTGTCAATACAAGTTCAACTCATAATGGGAATGTTGCTGCAACTGATTCCACACCTGCAGCTTCTACATCTCCTTTTAGTAGGAATGTTGACACCACTGCTAATATTGGCTCAGAAATTCAGACAACAGATAATAACATACAGACTGAGACTAGTACATTGGACCCTTCTTCATCTCGCAGAGGAAGCACTCGTGTTTCAACTTCAAGACAAGTTACAAATGATCGCAGAAGGAGGTCAAGATGA | 1197 | 0.4461 | MEPSDPTHASPDEFDSLLEELESAHEHVQDRIRRLEAITSRTRQYSSWPLFHTPIQITNSTGQTSALADAREEEMPSREVEERVVESGRGFKRKGAHLVAKALGRIETDANKEGGSTGNFYDCNICLDRARDPVLTCCGHLFCWPCFYQVQIVYSNARECPVCKGEVTETGIFPIYGNSSADGSCESGLKGAGLRIPPRPAAPRIESFRQQLISQGASSSVILNIRRFHHLIGGLGARVQSQNPNAATDRNNGLLAQSRPPSSNDRGTGSSQTPISTLLVQGAASFSSLSSALNSAMDSAERLVEDLESYFHNHQTNGVNTSSTHNGNVAATDSTPAASTSPFSRNVDTTANIGSEIQTTDNNIQTETSTLDPSSSRRGSTRVSTSRQVTNDRRRRSR* | 399 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso12g2031 | 398 | MobiDBLite | consensus disorder prediction | 241 | 273 | - | - | |
Gso12g2031 | 398 | MobiDBLite | consensus disorder prediction | 314 | 398 | - | - | |
Gso12g2031 | 398 | MobiDBLite | consensus disorder prediction | 314 | 387 | - | - | |
Gso12g2031 | 398 | Pfam | zinc-RING finger domain | 123 | 164 | IPR001841 | - | |
Gso12g2031 | 398 | CDD | RING-HC_AtRMA_like | 121 | 165 | - | - | |
Gso12g2031 | 398 | SUPERFAMILY | RING/U-box | 122 | 169 | - | - | |
Gso12g2031 | 398 | Coils | Coil | 18 | 38 | - | - | |
Gso12g2031 | 398 | PANTHER | ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN | 3 | 374 | - | - | |
Gso12g2031 | 398 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 3 | 374 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Gso12g2031 | 398 | SMART | ring_2 | 123 | 163 | IPR001841 | - | |
Gso12g2031 | 398 | ProSiteProfiles | Zinc finger RING-type profile. | 123 | 164 | IPR001841 | - | |
Gso12g2031 | 398 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 106 | 177 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso12g2031 | Gso-Chr12 | 44388364 | 44390739 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso12g2031 | 107 | 378 | C3H Transcription Factor Family | AT3G58030 | 32.903 | 2.25e-35 | 133 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso12g2031 | K10666 | - | gmx:100793230 | 721.079 |