Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g2030 ATGACGACCCGAATCGCGCCCGGTGTGGGAGCCAATTTGTTGGGTCAACATGCCGCCGAGAGGAATCAAGATGCCACTGCTTATGTCGGAAATCTCGACCCTCAGATATGTGAGGAGTTACTATGGGAGTTGTTTGTTCAGGCTGGTCCTGTCGTTAATGTCTATGTTCCCAAGGATAGAGTCACCAACCAACACCAGGGTTATGGTTTCGTTGAATTCCGCAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAACATGATTAAGCTTTATGGCAAACCCATCCGTGTCAATAAGGCATCCCAAGATAAAAAGAGCCTGGATGTTGGTGCAAATCTTTTCATTGGCAATCTTGATCCTGATGTAGACGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATCATGAGAGATCCTGAGACAGGAAATTCCCGTGGTTTTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCCATTGAGGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGACACTAAGGGTGAACGGCATGGTACCCCAGCAGAAAGAGTTTTGGCTGCAAGTAATCCAACTACACAGAAGAGCAGGCCTCATACTTTATTTGCCAGTGGACCTCCAACACTTCCCAGTGCTCCTCAGGCTAATGGGGTTGCTCCAGTGCCTCCCCGACCCTTTGTTAATGGGGTTGCTCCTGCTGCAATTCCTACCCTCCGTCCACCACCCCCTCAGGCTGCTGCATTCCAGCCTATGCCGGTGCCTGGACAACCAGCGTGGCATCAGCAACAGCCAGGTCAAACAATGTTATCACCCGCGATGCCACCACCTCAAATCCAGCAGTTCAGGCCACCTCACCCTGGTATGCAGCAGATGCCACCACCTCCACAAGCTCCACCCAGGCCTCTTCCTCCACCATCAGTAATGGCAAGTCAGCCACCACCTGTTTGGCGACCACCACCCCCTCAGCAGCAGGGTGGACGGCCTTTGCCATACCCTCAGTCTGCAATGCTGCCTCCACCACCTCCCCAGTAA 1095 0.4995 MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQICEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTTQKSRPHTLFASGPPTLPSAPQANGVAPVPPRPFVNGVAPAAIPTLRPPPPQAAAFQPMPVPGQPAWHQQQPGQTMLSPAMPPPQIQQFRPPHPGMQQMPPPPQAPPRPLPPPSVMASQPPPVWRPPPPQQQGGRPLPYPQSAMLPPPPPQ* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g2030 364 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Gso12g2030 364 CDD RRM2_SF3B4 111 193 IPR034159 -
Gso12g2030 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Gso12g2030 364 CDD RRM1_SF3B4 28 100 IPR034158 -
Gso12g2030 364 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 354 - -
Gso12g2030 364 MobiDBLite consensus disorder prediction 193 364 - -
Gso12g2030 364 MobiDBLite consensus disorder prediction 297 364 - -
Gso12g2030 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Gso12g2030 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Gso12g2030 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Gso12g2030 364 MobiDBLite consensus disorder prediction 280 295 - -
Gso12g2030 364 Gene3D - 16 106 IPR012677 -
Gso12g2030 364 PANTHER TRANSFORMER-2-RELATED 1 354 - -
Gso12g2030 364 SMART rrm1_1 113 187 IPR000504 GO:0003723
Gso12g2030 364 SMART rrm1_1 26 99 IPR000504 GO:0003723
Gso12g2030 364 Gene3D - 107 205 IPR012677 -
Gso12g2030 364 MobiDBLite consensus disorder prediction 237 271 - -
Gso12g2030 364 MobiDBLite consensus disorder prediction 207 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g2030 Gso-Chr12 44382827 44387036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g2030 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 36.145 4.21e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g2030 K12831 - gmx:100792707 602.823