Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g2029 ATGCAGTGCGGCGCGGCGAGTGGCTTACATATAAGTTATAACGACAAAGGGTGTAAGCGAAACACCCATTCAACATTTTCTCTGTCTATCTCTCGTTGTAGCGTAGCGCAGCAGTTGAATTTGGAAAACAAGATGTCTCACCGCAAGTTCGAGCACCCGAGACACGGTTCCCTTGGCTTTCTCCCAAGGAAGCGAGCTTCTCGTCATCGCGGAAAGGTGAAGGCTTTCCCAAAAGACAATCCTAGTCAACCATGCAGGTTGACTGCCTTTGTGGGCTACAAAGCTGGAATGACCCACATTGTTAGAGAGGTTGAGAAACCTGGATCAAAGCTTCACAAGAAAGAGACATGTGAAGCTGTTACTATCATTGAAACTCCTCCATTGGTTGTTGTTGGAGTTGTGGGATATGTTAAGACACCTCGTGGCCTTCGCACACTCAATACTATTTGGGCTCAGCATCTAAGTGAAGAAGTCAAGAGACGATTTTACAAAAACTGGTGCAAATCAAAAAAGAAGGCCTTTACCAAATATTCAAAAAAATATGAAACCGAGGAGGGAAAGAAAGATATTGAATCTCAGCTCGAGAAATTGAAGAAGTATGCAACTGTCATTCGTGTTCTGGCTCATACTCAGATAAGGAAGTTGAAGGGTCTGAAACAGAAGAAAGCACATTTGATGGAGATCCAAGTTAATGGTGGGACAGTAGACCAGAAGGTGGACTATGCATACAGCTTCTTCGAGAAGCAAATCCCAGTGGATGCTGTTTTCCAAAAAGATGAGATGATAGATATCATTGGTGTGACTAAGGGTAAAGGTTATGAAGGTGTTGTAACTCGTTGGGGTGTCACTCGCCTTCCTCGCAAGACTCACAGAGGTCTAAGGAAGGTTGCTTGCATTGGAGCTTGGCACCCTGCTCGTGTTTCTTTCACTGTTGCCAGGGCTGGTCAGAATGGATATCATCATCGCACCGAGCTGAATAAAAAGATCTACAAGGTTGCAAAGGCAGATCAAGAGTCACATTCAGCCATCACTGAATTTGACAGGACTGAGAAGGATATTACTCCTATGGGTGGGTTCCCTCATTATGGGGTGGTGAAGGATGATTATATTATGGTGAAGGGATGCTGTGTTGGACCGAAGAAGCGGGTTATCACTCTTCGTCAGTCGCTTCTCAAGCAGACATCTCGGGTGGCTCTGGAAGAGATCAAGCTCAAGTTCATCGACACCTCCTCCAAGTTTGGACATGGCCGCTTCCAGACCACTCAGGAGAAACACAAGTTTTATGGTCGCTTGAAGGCTTAA 1302 0.4539 MQCGAASGLHISYNDKGCKRNTHSTFSLSISRCSVAQQLNLENKMSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDNPSQPCRLTAFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRTLNTIWAQHLSEEVKRRFYKNWCKSKKKAFTKYSKKYETEEGKKDIESQLEKLKKYATVIRVLAHTQIRKLKGLKQKKAHLMEIQVNGGTVDQKVDYAYSFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVAKADQESHSAITEFDRTEKDITPMGGFPHYGVVKDDYIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKHKFYGRLKA* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g2029 433 Gene3D Translation factors 88 429 - -
Gso12g2029 433 Gene3D - 127 251 - -
Gso12g2029 433 ProSitePatterns Ribosomal protein L3 signature. 256 279 IPR019926 -
Gso12g2029 433 SUPERFAMILY Translation proteins 48 414 IPR009000 -
Gso12g2029 433 Pfam Ribosomal protein L3 45 414 IPR000597 GO:0003735|GO:0005840|GO:0006412
Gso12g2029 433 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 45 433 IPR045077 GO:0003735|GO:0005840|GO:0006412
Gso12g2029 433 PANTHER 60S RIBOSOMAL PROTEIN L3-1 45 433 - -
Gso12g2029 433 Gene3D Ribosomal protein L3, domain 3 45 318 IPR044892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g2029 Gso-Chr12 44377768 44381641 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g2029 45 430 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 86.010 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g2029 K02925 - gmx:100792174 773.852