Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g2025 ATGATAAAGCAGCCAACACCATCCTTGTGTTCCTTCACATGTGGATGGACTTATGATGTGTTCCTCAGTTTTAGTGGCATAGATACTCGCCATAGTTTCACGGACAATCTCTACAATTCTCTTAAACAAAGGGGAATCCATGCTTTCATTGACGATGAAGGGCTTAGAAGAGGGGAGGAAATTACACCAACTCTTCTCAAAGCCATCCGAGAATCTAGGATCGGCATCATTGTTTTCTCCAAGAGCTATGCATCCTCAACATATTGTTTGGATGAACTTGTTGAGATCCTTGAGTGCTTAAAGGTTGAAGGTCGATTGGTTTGGCCGGTTTTTTATGATGTGGATCCGTCACAAGTTCGGTATCAGACTGGGACTTATGCAGAAGCTTTGGCAAAGCATAAAGAAAGGTTTCAAGATGACAAGGGCAAGGTGCAAAAATGGAGGAAGGCTTTGCACGAAGCAGCTAATCTATCAGGATGGCATTTCCAACACGGGTCTGAATCAGAATATAAGTTTATTAAAAAGATTGTTGATGAGGCCTCTAAGAAGATCAATCGCACTCCTTTACATGTTGCTGATAACCCAGTTGGGCTAGAGTCTTCAGTGCTAGAAGTGATGTCTCTCCTAGGATCTGGGTCCGAGGTCAGCATGGTTGGTATTTATGGTATTGGAGGAATAGGTAAGACCACAGTTGCTCGTGCTGCATATAACATGATTGCTGATCAATTTGAAGGTTTGTGTTTTCTTGCTGACATTAGAGAAAAAGCCATTAGCAAGCATCGTCTTGTACAACTCCAAGAAACACTACTTTCTGATATACTTGGGGAGAAGGATATCAAAGTTGGAGATGTCAGTAGAGGAATTCCGATCATAGAAAGGAGGCTTCGAAAAAAGAAGGTCCTTTTGATTTTGGATGATGTTGACAAATTGGTGCAGTTACAGGTACTTGCTGGAGGATACTGTTGGTTTGGCTCTGGCAGCAAGATTATAATCACAACAAGAGACAAAAAGTTGCTAGCTACTCATGGGGTTGTAAAATTGCATGAGGTTAAACAGTTAAATGATGAAAAAGCTTTTGAATTGTTTAGTTGGCATGCCTTTAAAAGAAACAAATTTGACCCAAGTTATGTGGATATTTTAAACCGTGCAGTTTTTTATGCATGTGGCCTTCCATTGGCTTTGGAAGTGATAGGTTCTCACTTATTTGGGAAAAGTTTAGATGAATGTAATTCTGCATTAGATAAATATGAAAGAATTCCTCATAGAGGGATCCATGATATACTTAAAGTGAGTTATGATGGTTTGGAAGAAGATGAAAAGGGAATTTTCCTTGACATTGCTTGCTTTTTCAATACTTGTAATATGCGGTTTGTCAAACAAATGCTACATGCTCGTGGTTTTCATGCAGAAGATGGTATTAGAGTGTTGTCTGACAAATCTCTCATAAAGATTGATGAGTCTGGTTGTGTGAAAATGCATGACTTAATTCAGCACATGGGCAGGGAAATTGTAAGGCAAGAATCAAAATTAAAGCCTAGAAAACGCAGTAGATTGTGGCTTGATGAGGATATTGTTCGTGTTTTGGAAGAAAATAAGGGAACTGATAAAATTGAAGCCATTATGCTCAATGTCCGTGACAAGAAAGAAGTGCAGTGGAGTGGAAAAGCCTTCAAGAAAATGAAAAACCTCAAAATTCTGGTTATTATTGGGCAAGCAATCTTTTCTTCAATCCCCCAACATCTGCCAAATAGTTTGAGAGTGCTGGAATGGAGTTCTTATCCATCACCATCTTTACCACCTGATTTCAATCCTAAAGAACTTGAGATACTCAACATGCCTCAGAGTTGCCTAGAATTCTTCCAACCACTCAAGAGGTTTGAATCCTTGATTTCAGTTAATTTTGAAGATTGCAAGTTCCTAACTGAATTACATAGCCTCTGTGAAGTACCATTCCTAAGACATCTTTCTCTTGATAACTGCACCAATTTAATTAAAGTTCATGATTCTGTTGGGTTTCTTGACAATCTCCTCTTCTTGAGTGCTATAGGATGCACTCAGCTTGAAATTCTAGTACCCTGCATCAAGCTGGAATCTCTCGAGTTTCTAGATCTCACGGAGTGCTTTCGTCTTAAAAGCTTCCCAGAAGTAGTGGGAAAGATGGATAAAATAAAAGATGTTTATTTAGACAAGACTGGGATAACCAAATTGCCACATTCAATTGGAAATCTTGTTGGGCTTGAACGATTGTACCTGAGGCAATGCACACAGCTTTATCAACTACCAATTAGTATCCATATATTGCCTAATGTTGAAGTGATAACAGATTATGGTAAGAGGGGATTTCAATTATTTGAAGGATACCATGAAGACAAAGAAAAGGTGAGTTCAGAAAAATCTCCAAGTGCCATGGTTGACTATAATGAAGGTTCGTTTATTTACCTTGATTTGTGTTTTCCATACATAAGCTTCCATAATGTGATCGAAGTATGTAGTCCCAATCCACTTGAGTGTCATAATTTTGGTTTCTTGTTTAAACTGCTTCAAGCTGGGAGCTTGAATTGGTACAAGCCAGGAAGCAGGACATCATCAATGCAATTCTGGTTCCGGAAGAAATTCCCCAAGATAGCTCTATGTTTTAGTGTAGAAGCCTACATTAATAGAGCCAGTTGGGTGTTGGATTTTGAGTTTACTTTACTCATCAATGGCACTAAGCAATTCAGTTCTTCATGTAACTACATAACTTGTAAGTGGAATCCAATTCTTTGGTGTGATCTACAATGCAAAGAGGAGGGGGTATTTTCTAAGCATGAATGGAATGAAGTTGAGATTTTATGTGACGTCAAATACCCGATACCATGTGGCGAGAGGGTTATGGTCACAGCAAGGAACAAAATTGGAAGTCTAAACTGGTCCCTAATTTATGTCTATGAGGAGGGAAACAATATGGAGGATGTTGAATTCAAAAGTTCCATGCTCAGTTTTCCATTCTTTGGTGTAAAACCTATGTCCTCCTTACCTGGTTGCTTGTATTATCAAGTTGTATAA 3045 0.3882 MIKQPTPSLCSFTCGWTYDVFLSFSGIDTRHSFTDNLYNSLKQRGIHAFIDDEGLRRGEEITPTLLKAIRESRIGIIVFSKSYASSTYCLDELVEILECLKVEGRLVWPVFYDVDPSQVRYQTGTYAEALAKHKERFQDDKGKVQKWRKALHEAANLSGWHFQHGSESEYKFIKKIVDEASKKINRTPLHVADNPVGLESSVLEVMSLLGSGSEVSMVGIYGIGGIGKTTVARAAYNMIADQFEGLCFLADIREKAISKHRLVQLQETLLSDILGEKDIKVGDVSRGIPIIERRLRKKKVLLILDDVDKLVQLQVLAGGYCWFGSGSKIIITTRDKKLLATHGVVKLHEVKQLNDEKAFELFSWHAFKRNKFDPSYVDILNRAVFYACGLPLALEVIGSHLFGKSLDECNSALDKYERIPHRGIHDILKVSYDGLEEDEKGIFLDIACFFNTCNMRFVKQMLHARGFHAEDGIRVLSDKSLIKIDESGCVKMHDLIQHMGREIVRQESKLKPRKRSRLWLDEDIVRVLEENKGTDKIEAIMLNVRDKKEVQWSGKAFKKMKNLKILVIIGQAIFSSIPQHLPNSLRVLEWSSYPSPSLPPDFNPKELEILNMPQSCLEFFQPLKRFESLISVNFEDCKFLTELHSLCEVPFLRHLSLDNCTNLIKVHDSVGFLDNLLFLSAIGCTQLEILVPCIKLESLEFLDLTECFRLKSFPEVVGKMDKIKDVYLDKTGITKLPHSIGNLVGLERLYLRQCTQLYQLPISIHILPNVEVITDYGKRGFQLFEGYHEDKEKVSSEKSPSAMVDYNEGSFIYLDLCFPYISFHNVIEVCSPNPLECHNFGFLFKLLQAGSLNWYKPGSRTSSMQFWFRKKFPKIALCFSVEAYINRASWVLDFEFTLLINGTKQFSSSCNYITCKWNPILWCDLQCKEEGVFSKHEWNEVEILCDVKYPIPCGERVMVTARNKIGSLNWSLIYVYEEGNNMEDVEFKSSMLSFPFFGVKPMSSLPGCLYYQVV* 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g2025 1014 Pfam NB-ARC domain 202 405 IPR002182 GO:0043531
Gso12g2025 1014 PRINTS Disease resistance protein signature 217 232 - -
Gso12g2025 1014 PRINTS Disease resistance protein signature 294 308 - -
Gso12g2025 1014 PRINTS Disease resistance protein signature 387 401 - -
Gso12g2025 1014 PRINTS Disease resistance protein signature 694 710 - -
Gso12g2025 1014 SUPERFAMILY "Winged helix" DNA-binding domain 424 529 IPR036390 -
Gso12g2025 1014 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Gso12g2025 1014 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 12 695 - -
Gso12g2025 1014 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 446 IPR027417 -
Gso12g2025 1014 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 160 IPR035897 -
Gso12g2025 1014 SMART till_3 17 157 IPR000157 GO:0007165
Gso12g2025 1014 Gene3D Ribonuclease Inhibitor 530 782 IPR032675 -
Gso12g2025 1014 Pfam TIR domain 18 188 IPR000157 GO:0007165
Gso12g2025 1014 Gene3D - 13 187 IPR035897 -
Gso12g2025 1014 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 695 IPR044974 GO:0006952
Gso12g2025 1014 Gene3D - 352 436 IPR042197 -
Gso12g2025 1014 Gene3D - 188 347 IPR027417 -
Gso12g2025 1014 SUPERFAMILY L domain-like 541 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g2025 Gso-Chr12 44341117 44345345 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g2025 12 777 WRKY Transcription Factor Family AT4G12020 33.333 6.88e-93 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g2025 - - gmx:100802408 2004.95