Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g2022 ATGGCTATTAGTGGGTATGCACCAATGTTCTCAGATTTCAGCTACGATGTTTTTCTAAGTTTTAGTGGTGGAACCAGCAACCCTTTTGTTGATCCTCTCTGTCGAGCTTTGCGTGACAAAGGAATCAGCATCTTCAGATCAGAAGATGGAGAAACTAGACCTGCCATTGAGGAAATTGAAAAATCCAAAATGGTAATCGTTGTGTTTTGTCAAAACTATGCATTTTCCACTGAGTCTCTTGATGAACTTGTCAAGATCCGAGAGTATGTTGACAATAGAAGAAAACAGGTTTGGACAATTTTTTACATAGTGGAACCATCAGATGTACGGAAACAAAGAAATTCTTACAAAGATGCCATGAATGGTCATGAAATGACATATGGAAAAGACTCGGAGAAGGTAAAAGCATGGAGGGAAGCTTTGACTAGAGTATGCGACCTAAGCGGAATACATTGCAAGGACCATATGTTTGAAGCTGAACTTCAGAAGATTGTTGAAGCTGCATCCTGTAAATTATTTCGTGTGCCTGGACAAATGAACCATGCAGTTGGACTTGATGATCACTTTGAACAGGTGAAAGCATTCATAGATGTTGAGTCCAATGATAAGGTTGGCGTATTGGGAATTTATGGAGGTGGTGGAATAGGCAAGACCACATTTGCCGTCTATCTATATGAAAAGATTAGACATTATTATTTTGAAGCTGCAAGTTTTCTGATTAAAGTCAGAGAACAATCAAAGGAAAGCAAGAATCACTTGGAAGATCTCCAAAACAGACTTCTATCTCAACTGGGTGTAGACACAGGAACCATGATAGGGAGTACGAATAAAGGAGAACTTGAAATCAAACACAGGCTTGGCCATAGAAGAGTTCTTCTAGTTTTGGATGATGTTGATTCAAAAGAACAATTGGAGTTACTGGCTGGAAAACATGATTGGTTTGGTTCTGGCAGTAGGATCATTATAACAACAAGAGATGAAGCGGTGCTAGATTATGGTGTTAAAGTTAAGAAATATAAAATGACGGAGCTAAATGATCGTCACTCTCTTGAACTCTTCTGTCAGAATGCCTTTGATAAGCCTGAACCTGCAAAAAACTTTGAAAGTATTTCTCATCGTGCAATAGGCTATGCAAAGGGTGTCCCTTTGGCTTTACAAGTAATAGGATCCAATTTGAAAGGAAGAAGCATAGAGGAATGGGAAATCGAATTGGGAAAATATCGGAAGGTTCCAAATGCTAAGATTCAAGGTGTACTAAAACTAAGCTTCGATAGCCTGCCTGAGACAGAGATGGGAATATTCTTGGACATTGCTTGTTTTTTCAAAGGGGAGAAATGGAATTATGTTAAAAGGATATTGAAGGCTTCTGATATAAGTTTTAAAGTACTTGCTAGCAAATGTCTAATAATGGTTGATAGAAATGACTGCTTGGAGATGCATGATCTAATACAGGACATGGGTAGAGAGATTGTTAGGAATCAATCGCCATCAAACCCTGGTGACCGTAGTAGATTATGGTCTCACGAAGATGTTCTTGAAGTACTGAAAAAAGATTCAGTAACAATCCTCCTTTCTCCCATCATTGTTTCAATTACTTTTACTACGACTAAGGTAGCTAGTTTTAATTCCTTATGCATTTTTTTACAGGGAAGTATAACAATTGAAGGAATTATGCTTCATCCTCCTAAGCTTGAAGTAGTAGATAAATGGACTGATACTGCCTTTGAGAAGATGAAGAATCTCAGAATTCTTATTGTTCGGAATACCAAATTTTTAACAGGACCTAGTTCTCTACCGAATAAATTACAACTTCTTGATTGGATAGGATTCCCATCAGAGTCTTTTCCACCTAAATTTGATCCCAAGAATATTGTTGACTTCAAGTTATCTCATAGTTCTCTGGTATCCATAAAGCCACCTCAAAAGGTATTTCAGAATTTGACTTTTGTCAATCTCTCCCAGTGTCATTTCATAACTAAAATACCTGACATGTTTGAAGCTAAAAACTTGAGAGTACTGACAATTGACAAATGCCCCAAATTGGAAGGGTTTCATCCATCTGCTGGACATATGCCTAACCTTGTATATTTAAGTGCATCAGAGTGCACCATGCTCACGAGTTTTGTGCCAAAAATGAATCTGCCATATCTGGAAATGCTTTCATTTAACTTTTGCAGTAAACTTCAAGAATTCCCAGAAGTAGGGGGGAAGATGGATAAGCCATTAAAGATTCACATGATAAATACTGCTATTGAGAAGTTTCCAAAGTCCATTTGTAAAGTTACAGGGCTTGAGTATGTTGACATGACAACTTGCAGGGAACTCAAAGATTTATCAAGTTTTGTGTCATTGCCAAAACTTGTCACATTAAAGATGAATGGATGTTCGCAACTTGCAGAATCATTTAAAATGTTCAGAAAGAGCCATTCTGAAGCAAATAGCTGTCCAAGTTTAAAGGCATTATATTTAAGCAAGGCTAATCTGTCACATGAGGATCTTTCCATAATTCTTGAAATATTTCCAAAATTGGAATACTTAAATGTGTCCCACAATGAATTTGAATCACTCCCAGATTGCATCAAAGGATCATTGCAGTTGAAAAAACTTAATTTAAGTTTTTGCAGGAATCTTAAGGAAATTCCAGAACTTCCATCAAGTATTCAAAGGGTAGATGCAAGATACTGTCAATCCTTAAGTACAAAGTCATCAAGCGTGCTGTTGTCTAAGATTTATAAAGAAAGGGAAAAAATACAAGTTGTGATGCCAGAAACTGAAATTCCAAAGGAGTTTGACAGTAAAGATGTCCTGCTTTTCTGGGCTCGCCGGAAGTTCCCTGTTGTTGCTTTTGTTTTTGTTTTCGAGGAAGTAAAAAAGAATGATGATATACAGATGGATACCTCAGAATTGTTTCCTGGAGTTGTATCAGCTGAGGAGTCCTACACTGTTGGCCTGAACTTGTTTATAGACGGCAAAGAAATATGTCGCAAAGATCATCATTATTGGAGTATTGGGGATCAACATTTGTTAGTATGTGATCTACAGGTTTTGTTTAAAAATGAAGAGTGGCAGGATCTTGGAGATGACTGGAAGGCCTTTCAGATTCAATGTGAATCAACGTTGACTCTGAGTCATCAGGAAGTTTATGTGGACAAGCAGAAAACAAACACTGATGATATTCAATATATCTCTCCCAATTTAACAGGTTTGGTTCCAAAAACAAGTCCACATAAGAAAACAAGACATGGACAAAATTGTGATGTAATAGAAAAATTTGGCCAGAACTTGTTAATACAAACTACCTCTGTTGCCAACGTGTTATTGAGCTGGTGGAGGAATGCCAAGGCTGATATTAGAGGGGAAGTTTCAGCCTCTACCTATGAGGCAAGTTCACTGCAAGAACATGAAGATGTTGTCTGGGATGTGGCACAGATTTTGGAGATGCTGCTGGAGAATTTGCCCCAGCATATTACTGATTCAGAAGTTCAAAGAACAGGCCTATTGGCGGTTGAATCATTGATTGCACGGGCACAACATAAGAAGGAATACGGTCATGAGAAGTTGCACATCAATCTAACCATGCCTATTGTTCTAGTGGAATGTAGATGTCACCCTCATAAAGAATTAGAAGGAGCTCAAAACCTTCGCTATTGGGGATCTGTGGAGCTAGAAGAAGGAGACCCACGTGTGTGGAAAATTTGGAAGAGCAATGAAGCCTTCAAGGAGAGGCTAAATTACACAGTTCTGTTGAAATGTGAGCATCACTCTAGAGAGGAAGCTTCAAAATCTGACCATGGGGAATCCTTGGAGGAAGAACACAAGGGTTCTGAATTACAAGCATTGATGAGGAGGATAGAAGAAGACACTATAAGGTTGAATAAGTCTTATGGAAAGTTGAAGGCATCTATTGTTCCAATGGATGTTCTAGTTTCTGACAAATATCTTCTGGAAACGGCAATCATTAGAGGACTAGAAAGATTGGGAAGGTTGGGGTCTAATTTCAACAAGACAGAATATGGAAAATTGAGGGTGGAGCATCATGCTCATAGCATTACTCATATGGAGCATGAGTTGAGGATGGAGCAGGATGCTCAGAGCTCTACTCAGAATCAGGAGCGGCATGAGTTGGGGGTGGAGCATGATGCTCAGAGCTCTACTCAGGAAAAGAATAAGTTGGGTTGGATCAGATCATTACTAGGTGGATTTGGGAGGCAAAGCAGGTGA 4221 0.3862 MAISGYAPMFSDFSYDVFLSFSGGTSNPFVDPLCRALRDKGISIFRSEDGETRPAIEEIEKSKMVIVVFCQNYAFSTESLDELVKIREYVDNRRKQVWTIFYIVEPSDVRKQRNSYKDAMNGHEMTYGKDSEKVKAWREALTRVCDLSGIHCKDHMFEAELQKIVEAASCKLFRVPGQMNHAVGLDDHFEQVKAFIDVESNDKVGVLGIYGGGGIGKTTFAVYLYEKIRHYYFEAASFLIKVREQSKESKNHLEDLQNRLLSQLGVDTGTMIGSTNKGELEIKHRLGHRRVLLVLDDVDSKEQLELLAGKHDWFGSGSRIIITTRDEAVLDYGVKVKKYKMTELNDRHSLELFCQNAFDKPEPAKNFESISHRAIGYAKGVPLALQVIGSNLKGRSIEEWEIELGKYRKVPNAKIQGVLKLSFDSLPETEMGIFLDIACFFKGEKWNYVKRILKASDISFKVLASKCLIMVDRNDCLEMHDLIQDMGREIVRNQSPSNPGDRSRLWSHEDVLEVLKKDSVTILLSPIIVSITFTTTKVASFNSLCIFLQGSITIEGIMLHPPKLEVVDKWTDTAFEKMKNLRILIVRNTKFLTGPSSLPNKLQLLDWIGFPSESFPPKFDPKNIVDFKLSHSSLVSIKPPQKVFQNLTFVNLSQCHFITKIPDMFEAKNLRVLTIDKCPKLEGFHPSAGHMPNLVYLSASECTMLTSFVPKMNLPYLEMLSFNFCSKLQEFPEVGGKMDKPLKIHMINTAIEKFPKSICKVTGLEYVDMTTCRELKDLSSFVSLPKLVTLKMNGCSQLAESFKMFRKSHSEANSCPSLKALYLSKANLSHEDLSIILEIFPKLEYLNVSHNEFESLPDCIKGSLQLKKLNLSFCRNLKEIPELPSSIQRVDARYCQSLSTKSSSVLLSKIYKEREKIQVVMPETEIPKEFDSKDVLLFWARRKFPVVAFVFVFEEVKKNDDIQMDTSELFPGVVSAEESYTVGLNLFIDGKEICRKDHHYWSIGDQHLLVCDLQVLFKNEEWQDLGDDWKAFQIQCESTLTLSHQEVYVDKQKTNTDDIQYISPNLTGLVPKTSPHKKTRHGQNCDVIEKFGQNLLIQTTSVANVLLSWWRNAKADIRGEVSASTYEASSLQEHEDVVWDVAQILEMLLENLPQHITDSEVQRTGLLAVESLIARAQHKKEYGHEKLHINLTMPIVLVECRCHPHKELEGAQNLRYWGSVELEEGDPRVWKIWKSNEAFKERLNYTVLLKCEHHSREEASKSDHGESLEEEHKGSELQALMRRIEEDTIRLNKSYGKLKASIVPMDVLVSDKYLLETAIIRGLERLGRLGSNFNKTEYGKLRVEHHAHSITHMEHELRMEQDAQSSTQNQERHELGVEHDAQSSTQEKNKLGWIRSLLGGFGRQSR* 1407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g2022 1406 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 19 526 - -
Gso12g2022 1406 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 560 1092 - -
Gso12g2022 1406 Pfam TIR domain 15 152 IPR000157 GO:0007165
Gso12g2022 1406 Gene3D - 343 427 IPR042197 -
Gso12g2022 1406 SMART till_3 14 147 IPR000157 GO:0007165
Gso12g2022 1406 Coils Coil 239 259 - -
Gso12g2022 1406 PRINTS Disease resistance protein signature 206 221 - -
Gso12g2022 1406 PRINTS Disease resistance protein signature 285 299 - -
Gso12g2022 1406 PRINTS Disease resistance protein signature 378 392 - -
Gso12g2022 1406 PRINTS Disease resistance protein signature 782 798 - -
Gso12g2022 1406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 437 IPR027417 -
Gso12g2022 1406 Gene3D - 173 338 IPR027417 -
Gso12g2022 1406 Gene3D Ribonuclease Inhibitor 744 915 IPR032675 -
Gso12g2022 1406 Gene3D Ribonuclease Inhibitor 568 743 IPR032675 -
Gso12g2022 1406 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 560 1092 IPR044974 GO:0006952
Gso12g2022 1406 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 526 IPR044974 GO:0006952
Gso12g2022 1406 SUPERFAMILY "Winged helix" DNA-binding domain 414 516 IPR036390 -
Gso12g2022 1406 MobiDBLite consensus disorder prediction 1357 1388 - -
Gso12g2022 1406 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 149 IPR035897 -
Gso12g2022 1406 ProSiteProfiles TIR domain profile. 13 165 IPR000157 GO:0007165
Gso12g2022 1406 SUPERFAMILY L domain-like 570 904 - -
Gso12g2022 1406 Gene3D - 10 172 IPR035897 -
Gso12g2022 1406 MobiDBLite consensus disorder prediction 1256 1275 - -
Gso12g2022 1406 Pfam NB-ARC domain 187 401 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g2022 Gso-Chr12 44314983 44320916 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g2022 8 798 WRKY Transcription Factor Family AT4G12020 28.221 3.47e-68 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g2022 - - gsj:114379881 2769.96