LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso12g2021	ATGGCAAATCTGAACCACGGTGCAACATTCAGAGATGATTTCTTCTACGATGTTTTTCTGAGTTTTAGAGGTGGGACCCGTTATGGGTTCACGAATCGTCTCTACAATGCTTTGCGGCAAAAGGGAATATACACTTTCAGAGATACTGAGGAGCTTAGGATTGGAGCAGACATCAGACCCGCGCTTCTGAAGGCAATAGAAAATTCAAGAATGTCAATGGTTGTGCTCTGTGAAGACTACGCGTCTTCTACTTGGTGTCTTGATGAACTTGCCAAGATCATTCAATGCTATCATGCAAATAAGCCCAAACAAGTTCTGCTCATATTTTACAAAGTTCAACCTTCTGATGTGTGGGACCAGAAAAATTCGTATGCAAAAGCCATGGCTGACCATGAAAACAGATTCGCAAAACAACCCGAGAAGGTGAAAAATTGGAGAAAAGCTTTGTCTCAACTGCGCCACCTCACCAGAGAATATTGCAAGGATGACGGGTACGAAGCTGAACTTATCAAGAAGATTGTGAAAGACACCTCTGCTAAATTACCTCCAATCCCTTTACCAATTAAACATGTAGTTGGACTCGATTCTCGGTTTCTAGATGTGAAATCAATGATACATATCGAGTCTCATGATACCGTCCTCATCTTAGAAATTTATGGAGCTGGTGGAATTGGCAAAACTACATTTGCCTTGGATATATATAACAATATTCGACATGAATTTGAAGCTGCAAGTTTTCTCGCTAATGTCAGAGAAAAATCAAACAAAAGCACTGAAGGCCTGGAAGATCTCCAAAAGACACTTCTATCTGAGATGGGTGAGGAAACAGAAATTATAGGGGCCAGTGAAATCAAACGCAGACTTGGTCATAAAAAGGTTCTTTTGGTTTTGGATGATGTTGATTCGACAAAACAATTGGAGTCCCTAGTTGGAGGAGGTGATTGGTTTGGTTCCAGAAGTAGGATCATTATAACAACAAGGGATACAACATTGCTAGATGAGCATGTCATTGATGATGTTGTCATTGAAACATATGAAATGAAGGCGCTTAATTATGGTGACTCTCTTGAGCTCTTTTGTTGGCATGCTTTTAATATGAGCAAACCTGCAGAAAACTTTGAAGGTGTTTCTAATGATGCAGTGCGTTATGCAAAAGGCCATCCGTTAGCTTTAAAAGTAATAGGCTCCAATCTAAAGGGTGGGAGCCTAAAGGATTGGGAAATGGAATTGGAAAAATATAAAATGATTCCAAATGCCAAGATTCAAGAAGTACTTGAAATAAGCTACCACAGCTTAGATGTCTTGGACCAGAAAATTTTCTTGGACATTGCTTGTTTCTTCAAGGGAGAGAGAAGGGGATATGTTGAAAGGATACTAAAGGCTTGTGATTTCTGCCCAAGTATTGGAGTATTTACTGCGAAATGTCTCATAACTATTGATGAAGATGGCTGCTTGGATATGCATGATCTAATACAAGACATGGGTAGAGAGATTGTCAGAAAGGAGTCATCGATAAATGCTGGTGACCGTAGCAGACTTTGGTCTCATGAGGAAGTTCTTCGAGTACTTATAGAAAATTCGGGAAGCAATAGAATTGAAGGAATAATGCTTGATCCCCCTAGTCATGAAAAAGTAGATGATAGGATAGATACTGCCTTTGAGAAGATGGAGAACCTAAGAATTCTGATCATTCGGAATACAACATTTTCAACGGCACCTAGTTATCTACCAAACACTTTGCGATTACTTGAGTGGAAAGGGTACCCATCCAAGTCTTTTCCACCAGATTTTTATCCCACCAAAATTGTTGATTTCAAGTTAAATCATAGTTCTCTAATGTTGGAAAAGTCATTTAAGAAATATGAGGGATTGACATTCATCAACCTGTCCCAGTGTCAATCCATAACTCGAATTCCTGATGTGTCTGGAGCTATAAATTTAAAAGTTTTGACACTCGATAAATGCCGTAAACTGAAAGGATTTGATAAATCCATTGGCTTTATGCGTAACCTTGTGTATGTAAGTGCTCTAAGGTGCAACATGCTCAAAAGTTTCGTGCCAAGCATGAGTTTACCATCTCTTGAGGTGCTTTCATTTAGCTTTTGCAGCAGACTTGAACACTTCCCAGACGTAATGGAAGAGATGGATAGGCCGTTAAAGATTCAATTGGTAAATACTGCAATTAAGGAATTTCCAATGTCTATCGGCAAACTTACAGGGCTTGAGTACTTAGACATTTCAGGTTGCAAAAAACTTAATATATCAAGAAAGTTGTTCTTGTTGCCAAAACTTGAGACCTTATTAGTTGATGGATGTTCACATATTGGACAATCATTTAAAAGGTTCAAAGAAAGGCATTCAATGGCAAATGGTTGCCCAAATTTGAGGACACTGCATCTAAGCGAGACAAATTTATCAAATGAAGAATTGTATGCAATTCTGAAAGGTTTTCCAAGACTGGAAGCCTTGAAGGTTTCGTATAATGATTTCCACTCTCTCCCAGAATGCATCAAAGATTCTAAGCAATTAAAAAGTCTTGATGTGAGTTATTGCAAGAATCTCAGCAGCATTCCAGAACTCCCTCCAAGTATCCAAAAAGTAAATGCCAGATATTGTGGGCGCTTAACTTCAGAGGCATCAAATTCGCTATGGTCTAAGGTAAATGAAGAGAAGGAAAGGATACAATTTGTGATGGCAGAAACAGACATTCCAGATTGGTTTGAGTTTGATTGTGTTGGTGGATCAGATAGTCCTACTCCGCTTATGTTGGCACGCAATAAGTTCCCTATTATTGCTGTAGCATTTGCATTGGGCAAGGCCAAATCTGGCTACTCTGAAACGGAGTTATCCCGCACCCTTGGTCTCCACGTGTTCGTAGGCGACGGCTACCCTAAAAGGGAGTTATCTTACACTGCTGCTGTCCACTTGTACATAGGCGGCAAAGAAATATGCCGCAAAGAGTACCATTATTGTTGTGTTGGGGAGGAGCACGTGCTATTGTGTGATCTAATGGTTTTGTTCAGTGACCAAGAGTGGGAGGGTCTTGATGCACATTTCACTGGAGATGATGAATGGAGGGTAATTCAGGTTCAATGTGAATCAGACTTGCCATTGAGTCAATGGGGAGTATTTGTGTACAAGCAGAAAACAAACACTGATGATATCCTATTTACGAATACCCGTCACAACTGCTTATTGACTAATTTGGTTCAGAAAGAAACTCCATGGAAGTCTGAGCAGAGAAGAAGACACTTCTTCAATAATTTTAACCTGAGAGAAATTTATGGCGACCGTTTGACTCTTTATGGTGAGTCATTAGACCAATGCCAGCTGTTTTCTTCAAACATGGTTTTTAGGCACATTCTGGCCGACATTATCAAAGGGAAACTAGTTTCAGCCTGCGATTATGGGGCAAGTTTAATGCAAGCTCACGATGAATCTAGCGGCGATGTGAAGCACACTATGAAGATTTACAAGGAGCGTCTTGATGACACACAAGCTACATATGGACTTATGGAACTTGGACTCGAGGCACGCGAAGAATTGTCATGGGCAGAAGGGGAGGATCGGTTAGTCGTGGAATTCGCTATTATCCTAGAGGAGGAAGATGGAAATCGTCGCTATTGGGGAACATTGAAGTTGAAAGCTGGAGAAGCAGGGTTCGATGAAATGGAGAGGAAGGAATTGCAATTCCTTTGTTTGCGCCGAGCATTCATGTCATACACAAGTGCCCAAAAGGAGTCAATGCTTGTTGTTCTGTTGAAAAGAGAGGAAGCTTCAACCTCTGGCCAGGGGGAGGAGGAGGGAGAATGGCAAGAGTATGACCCTATATTGGAAGAATTGATGTCTGAAATAGCGGAAGATGCTACGAGGTTGAGTAAATCTTATGGGAAATTGAAGGCGTCTATTGTTCCGGTTACGTCAGATAACTTGGTTTCTGACAAATATTCCTTGGAAGGAATATTCTTGAATGCAATAGTAAAACTGGAAGATGGAAAATGGGGACCAACAAAAATACAATTGGGATACGCGGTGATTAGAATGTTAATTTGCGGACAGTGCCCACCGGGATTGTTTGGAACTAAGGTTAAGAAGATGTCCTACGGGATCTTAAGGGAGGAGCTTCATGATGATTGGCGCTGGAATTTATTGGGCTGCTTAATTAACCTTATTCCATCATTTAACTATTTTATTTTGAAATTCATAGTACCTCTCTCGTTGGATTATTTTGTAGCTCTAATTCATGTCAAATCAGTCCATTGGTTACAAAATCATTTAGGATTAACAATTGGTTTCTTGGTTTATACTATAACTCTTAATTTGGTTACTTGGTTTCTAGGAACTCGATTTCTCTGGAGATGTAATGACAGGTTTTCTTTCCTTTTAAACCAATTAGTCGCCAGGTGTCGTAGGTATTTCACATTGCTTCTATCTTCTATTATGTAA	4446	0.4001	MANLNHGATFRDDFFYDVFLSFRGGTRYGFTNRLYNALRQKGIYTFRDTEELRIGADIRPALLKAIENSRMSMVVLCEDYASSTWCLDELAKIIQCYHANKPKQVLLIFYKVQPSDVWDQKNSYAKAMADHENRFAKQPEKVKNWRKALSQLRHLTREYCKDDGYEAELIKKIVKDTSAKLPPIPLPIKHVVGLDSRFLDVKSMIHIESHDTVLILEIYGAGGIGKTTFALDIYNNIRHEFEAASFLANVREKSNKSTEGLEDLQKTLLSEMGEETEIIGASEIKRRLGHKKVLLVLDDVDSTKQLESLVGGGDWFGSRSRIIITTRDTTLLDEHVIDDVVIETYEMKALNYGDSLELFCWHAFNMSKPAENFEGVSNDAVRYAKGHPLALKVIGSNLKGGSLKDWEMELEKYKMIPNAKIQEVLEISYHSLDVLDQKIFLDIACFFKGERRGYVERILKACDFCPSIGVFTAKCLITIDEDGCLDMHDLIQDMGREIVRKESSINAGDRSRLWSHEEVLRVLIENSGSNRIEGIMLDPPSHEKVDDRIDTAFEKMENLRILIIRNTTFSTAPSYLPNTLRLLEWKGYPSKSFPPDFYPTKIVDFKLNHSSLMLEKSFKKYEGLTFINLSQCQSITRIPDVSGAINLKVLTLDKCRKLKGFDKSIGFMRNLVYVSALRCNMLKSFVPSMSLPSLEVLSFSFCSRLEHFPDVMEEMDRPLKIQLVNTAIKEFPMSIGKLTGLEYLDISGCKKLNISRKLFLLPKLETLLVDGCSHIGQSFKRFKERHSMANGCPNLRTLHLSETNLSNEELYAILKGFPRLEALKVSYNDFHSLPECIKDSKQLKSLDVSYCKNLSSIPELPPSIQKVNARYCGRLTSEASNSLWSKVNEEKERIQFVMAETDIPDWFEFDCVGGSDSPTPLMLARNKFPIIAVAFALGKAKSGYSETELSRTLGLHVFVGDGYPKRELSYTAAVHLYIGGKEICRKEYHYCCVGEEHVLLCDLMVLFSDQEWEGLDAHFTGDDEWRVIQVQCESDLPLSQWGVFVYKQKTNTDDILFTNTRHNCLLTNLVQKETPWKSEQRRRHFFNNFNLREIYGDRLTLYGESLDQCQLFSSNMVFRHILADIIKGKLVSACDYGASLMQAHDESSGDVKHTMKIYKERLDDTQATYGLMELGLEAREELSWAEGEDRLVVEFAIILEEEDGNRRYWGTLKLKAGEAGFDEMERKELQFLCLRRAFMSYTSAQKESMLVVLLKREEASTSGQGEEEGEWQEYDPILEELMSEIAEDATRLSKSYGKLKASIVPVTSDNLVSDKYSLEGIFLNAIVKLEDGKWGPTKIQLGYAVIRMLICGQCPPGLFGTKVKKMSYGILREELHDDWRWNLLGCLINLIPSFNYFILKFIVPLSLDYFVALIHVKSVHWLQNHLGLTIGFLVYTITLNLVTWFLGTRFLWRCNDRFSFLLNQLVARCRRYFTLLLSSIM*	1482

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso12g2021	1481	Gene3D	Ribonuclease Inhibitor	719	886	IPR032675	-
	Gso12g2021	1481	Gene3D	Ribonuclease Inhibitor	541	718	IPR032675	-
	Gso12g2021	1481	SUPERFAMILY	L domain-like	487	879	-	-
	Gso12g2021	1481	Gene3D	-	12	180	IPR035897	-
	Gso12g2021	1481	ProSiteProfiles	TIR domain profile.	14	181	IPR000157	GO:0007165
	Gso12g2021	1481	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	20	1146	-	-
	Gso12g2021	1481	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	183	443	IPR027417	-
	Gso12g2021	1481	Pfam	TIR domain	16	181	IPR000157	GO:0007165
	Gso12g2021	1481	Gene3D	-	349	433	IPR042197	-
	Gso12g2021	1481	PRINTS	Disease resistance protein signature	215	230	-	-
	Gso12g2021	1481	PRINTS	Disease resistance protein signature	287	301	-	-
	Gso12g2021	1481	PRINTS	Disease resistance protein signature	384	398	-	-
	Gso12g2021	1481	PRINTS	Disease resistance protein signature	736	752	-	-
	Gso12g2021	1481	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	20	1146	IPR044974	GO:0006952
	Gso12g2021	1481	CDD	AAA	192	328	-	-
	Gso12g2021	1481	SUPERFAMILY	Toll/Interleukin receptor TIR domain	9	154	IPR035897	-
	Gso12g2021	1481	Pfam	NB-ARC domain	213	408	IPR002182	GO:0043531
	Gso12g2021	1481	Gene3D	-	181	342	IPR027417	-
	Gso12g2021	1481	SMART	till_3	15	155	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso12g2021	Gso-Chr12	44303572	44310812	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso12g2021	16	805	WRKY Transcription Factor Family	AT4G12020	31.068	8.19e-80	290

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso12g2021	-		-	gmx:100800797	2952.16