Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g2016 ATGGAATTCATGTCGTCGTCGTCTTCTTCTTCATCCTTCTCAAAATCCAATCCTGGAAGGATGTACGATGTGTTCATCAATTTCAGGGGAGAAGACACCCGTAGGAATTTCGTTTGTCATCTCCATTCCGTCCTCTCAAATGCTGGGGTCAACACTTTCCTTGACGACGAGAATCTTGTCAAGGGAATGGAACTAATACAACTAATGCGGGCAATAGAAGGGTCTCAGATATCTTTGGTTGTTTTCTCCAAGAACTATACTCAATCTACATGGTGTCTTACTGAGCTTGAAAATATCATCAAATGCCACAGACTTCATGGCCACGTAGTTGTGCCCATATTTTACCATGTTTCCCCATCCGATGTACGTCGTCAGGAGGGTGATTTTGGAAAAGCTCTGAATGCATCTGCAGAAAAAATATATTCAGAAGATAAGTATGTGTTGTCCAGGTGGGGCAGCGCACTCACCACTGCTGCAAATTTCTGTGGTTGGGATGTGATGAAACCCGGGAATGAAGCTAAACTAGTGAAGGAAATTGTTGATGACGTTCTCAAAAAACTAAACGGAGAAGTGTTGTCTATTCCCGAATTTCCCGTCGGATTGGAACCCCGTGGGCAAGAAGTGATTGGTTTTATAAAAAACCAGTCCACCAAAGTTTGTATGATAGGGATATGGGGAATGGGAGGATCTGGTAAAACTACCATAGCCAAATTCATCTACAATCAAATTCATAGTAGATTCCCAGGTAAAAGTTTCATTGAAAATATTAGAAAAGTTTGTGAAACAGATGGTAGAGGGCATGCTCATTTACAAGAACAACTTCTTACTGATGTCCTAAAAACAAAGGTGAAGATACATAGCGTTGGGATGGGAACAAGTATGATCGAGAAAAGACTTTCAGGAAAAGAGGTACTCATTGTACTTGATGATGTGAATGAGTTTGACCAATTAAAAGACCTGTGTGGAAATCGAAAATGGATTGGTCTAGGAAGTGTAATAATCATTACAACTAGAGATAGGGGCTTACTGAACATACTTAATGTTGATTATGTTTATAAAATGGAGGAAATGAATGAAAATGAGGCCCTTGAGCTTTTTAGTTGGCATGCGTTTAGAAAAGCAGAACCAAGAGAAGAATTCAACGAACTTGCAAGAAATGTAGTTGCTTATTGTGGAGGACTACCACTAGCTCTAGAAGTTCTTGGTTCTTATTTAATTGAGAGGACAGAGAAAGAGTGGAAAAATTTATTGTCAAAACTAGAAATAATTCCCAACAATCAAGTTCAAAAGAAATTAAGAATAAGCTTTGACGGTTTACACGATCAGATGGAAAAGGATATATTCCTTGATGTTTGTTGTTTCTTTATTGGTAAAGACAAAGCCTATGTCACGGAGATACTAAATGGCTGTGGACTGCATGCTGATATTGGAATAACAGTTCTGATAGAGCGTAGCCTCATAATAGTTGAAAAGAACAACAAACTTGGAATGCATCAGTTGGTAAGAGACATGGGAAGGGAGATAATTCGTGAAAGTTTAACAAAGGAACCTGGGAAGCGCAGTCGATTGTGGTTTCATAAGGATGTAATTGATGTATTGACAAAGAATACTGGGACAGAAGCTGTAGAGGGATTGGCACTGAAATTGCATTTAACCAGCAGAGATTGCTTCAAAGCTGATGCTTTTGAGGAAATGAAGAGATTGAGATTGTTGAAACTTGATCACGCACAAGTCACTGGAGATTATGGGAATTTTTCTAAGCAACTGAGATGGATCAATTGGCAAGGATTTCCTTTAAAGTACATACCTAAAACCTTTTATCTGGAAGGTGTAATTGCGATTGATTTAAAACACAGTAATCTTAGGCTATTTTGGAAAGAATCCCAGGTTTTGGGGCAGCTAAAAATGCTCAATCTCAGTCATTCCAAGTACTTGACAGAAACCCCTGACTTTTCAAAACTACCAAAACTTGAAAATCTCATTCTCAAAGATTGCCCACGTCTGTGCAAGGTACACAAGTCCATTGGAGATCTCCACAATCTTCTTCTGATAAATTGGACGGACTGTACAAGTCTTGGCAATCTGCCAAGGAGAGCTTATGAATTAAAATCTGTGAAAACTCTCATCCTTTCTGGTTGTTTGAAGATTGACAAGTTGGAAGAAAACATAATGCAGATGGAATCCTTGACAACTCTAATTGCAGAAAATACTGCCGTGAAAAAAGTACCCTTTTCGGTAGTAAGATCCAAAAGTATTGGATATATATCCGTAGGTGGATTTAAAGGATTAGCACATGATGTTTTTCCTTCTATCATTTTGTCTTGGATGTCACCAACAATGAATCCCCTATCTCGTATTCCTCCGTTTTTGGGCATATCATCGTCTATAGTTCGCATGGATATGCAGAATAGTAACTTGGGTGATCTAGCACCAATGTTTAGCAGCCTTTCAAATCTTCGAAGTGTTTTGGTGCAATGTGACACAGAGTCTCAACTATCTAAACAATTAAGAACAATTCTGGATGACTTACATTGTGTAAATTTTACTGAATTAAAAATAACATCATATACATCACAAATTTCAAAGCAATCCTTGGAGTCTTATTTGATTGGCATTGGAAGTTTCGAAGAAGTCATCAATACTCTCTGCAAGAGCATATCTGAGGGATTGGCAACCAGTGAGGGTTGTGATGTTTTTCTCCCAGGTGACAACTATCCTTATTGGTTGGCCCGTACAGGTAAGGGACATTCAGTGTATTTCATTGTGCCGGAGGATTGTCGCATGAAGGGAATGGCTTTGTGTGTCGTTTATGTATCAGCCCCTGAAAGCACAGCAACTGAATGTCTTATTAGTGTCTTAATGGTTAATTACACAAAGTGCACCTTGCAGATATACAAGCGAGACACAGTAATTTCCTTTAATGATGTGGATTGGCAAGGCATAATATCTCATTTGGGATCTGGAGATAAGGTGGAGATTTTTGTTACTTTTGGGCATGGATTGGTGATCAAGAAGACAGCTGTCTATCTAATGTATGATGAATCAATTGACACAGACATGGAGCCTACTCCCGAGCCAAAGAAAAATTCCTTTGTAAGATTCATAAAGAAAATTGTAATGAGTAAGATTCAAGAGGAGTAA 3141 0.3865 MEFMSSSSSSSSFSKSNPGRMYDVFINFRGEDTRRNFVCHLHSVLSNAGVNTFLDDENLVKGMELIQLMRAIEGSQISLVVFSKNYTQSTWCLTELENIIKCHRLHGHVVVPIFYHVSPSDVRRQEGDFGKALNASAEKIYSEDKYVLSRWGSALTTAANFCGWDVMKPGNEAKLVKEIVDDVLKKLNGEVLSIPEFPVGLEPRGQEVIGFIKNQSTKVCMIGIWGMGGSGKTTIAKFIYNQIHSRFPGKSFIENIRKVCETDGRGHAHLQEQLLTDVLKTKVKIHSVGMGTSMIEKRLSGKEVLIVLDDVNEFDQLKDLCGNRKWIGLGSVIIITTRDRGLLNILNVDYVYKMEEMNENEALELFSWHAFRKAEPREEFNELARNVVAYCGGLPLALEVLGSYLIERTEKEWKNLLSKLEIIPNNQVQKKLRISFDGLHDQMEKDIFLDVCCFFIGKDKAYVTEILNGCGLHADIGITVLIERSLIIVEKNNKLGMHQLVRDMGREIIRESLTKEPGKRSRLWFHKDVIDVLTKNTGTEAVEGLALKLHLTSRDCFKADAFEEMKRLRLLKLDHAQVTGDYGNFSKQLRWINWQGFPLKYIPKTFYLEGVIAIDLKHSNLRLFWKESQVLGQLKMLNLSHSKYLTETPDFSKLPKLENLILKDCPRLCKVHKSIGDLHNLLLINWTDCTSLGNLPRRAYELKSVKTLILSGCLKIDKLEENIMQMESLTTLIAENTAVKKVPFSVVRSKSIGYISVGGFKGLAHDVFPSIILSWMSPTMNPLSRIPPFLGISSSIVRMDMQNSNLGDLAPMFSSLSNLRSVLVQCDTESQLSKQLRTILDDLHCVNFTELKITSYTSQISKQSLESYLIGIGSFEEVINTLCKSISEGLATSEGCDVFLPGDNYPYWLARTGKGHSVYFIVPEDCRMKGMALCVVYVSAPESTATECLISVLMVNYTKCTLQIYKRDTVISFNDVDWQGIISHLGSGDKVEIFVTFGHGLVIKKTAVYLMYDESIDTDMEPTPEPKKNSFVRFIKKIVMSKIQEE* 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g2016 1046 Gene3D - 19 188 IPR035897 -
Gso12g2016 1046 ProSiteProfiles TIR domain profile. 20 187 IPR000157 GO:0007165
Gso12g2016 1046 Pfam NB-ARC domain 208 425 IPR002182 GO:0043531
Gso12g2016 1046 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 164 IPR035897 -
Gso12g2016 1046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 450 IPR027417 -
Gso12g2016 1046 Gene3D Ribonuclease Inhibitor 555 876 IPR032675 -
Gso12g2016 1046 SMART till_3 21 161 IPR000157 GO:0007165
Gso12g2016 1046 Pfam TIR domain 22 195 IPR000157 GO:0007165
Gso12g2016 1046 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 25 1011 - -
Gso12g2016 1046 SUPERFAMILY L domain-like 497 853 - -
Gso12g2016 1046 Gene3D - 356 440 IPR042197 -
Gso12g2016 1046 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 1011 IPR044974 GO:0006952
Gso12g2016 1046 Gene3D - 189 351 IPR027417 -
Gso12g2016 1046 PRINTS Disease resistance protein signature 221 236 - -
Gso12g2016 1046 PRINTS Disease resistance protein signature 298 312 - -
Gso12g2016 1046 PRINTS Disease resistance protein signature 391 405 - -
Gso12g2016 1046 PRINTS Disease resistance protein signature 629 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g2016 Gso-Chr12 44264188 44269065 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g2016 13 735 WRKY Transcription Factor Family AT4G12020 28.456 1.01e-81 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g2016 - - gmx:100798685 2083.53