Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g2012 ATGAGTATTGTGTATAGTCATGCTGTGAAGTACTCTCAAGGGGAAACAAGGATGAACCCAGAAATGGATTCAAACATTGGTCAACATTGTCACCAACAAAATTCTGGACTAATGAGATACCGTTCTGCCCCAAGCTCATTGCTCACAAGCCTTGCGAACAACAACAACATTAATAATAACACCACCACCAATGGTTGTGTTAATGGCAAAGCTTTCAGAAGTGTGCATAATCATCATCAGCAGCAACGTTATCCTCCCTCCACAAGTTCTGAAATGGAGACCATGTTGGCCAAGTTGATTTCTTCAAACAATTCTGAGCCTTTGCAAGTGAAGGAAGAAGCAGTGGCCTCTGTTTCACAGCCACCACAACAGCACAATGGTTACTCCTATGGGTCTTCACCTCAGATGATGTACCAAACTCAGCAAATTCAAGGCTTGCCTATGCCAAATGGTTCTTTAGGGAATGCTTTTGATGGCTCATTCAGTGCAGTGAATTCCCTTGCTTCACAGAATTCCACACAACCTAGACTGGGTGCTTCCACCAATTGCAACAATCTCATTAGGCAAAAGAGTTCCCCTGCTGGGTTTTTCTCCAATTACTCAGTTGATAATGCAATGAGAGATGTGGCAAGTTTTAGGGGCTGTGATGTCTCAAATGGACAAGCTATTACATCCTCAAGTGGGTTGCATGGTGGTACTTTGAACTTATCATCTAGGCCATCCTCTTGCTCCACCCGAATGCCACAGATTGCTGAAAATGGAAATGAAGGTGTGGAAGGAAATTATGTTGAAAGTAGAAACCTGAGAAATGATAATATCAACAGCACTAAATGTTACATGCCTAGTTTCACCACTGACTTCTGGGATGGTTCTTCATTCAGTCCCAGAACAGCTAGTAACAATGGTGAAATCTCATTTTCCACTTCAAATGCTATGGATATTCAGGGTGAAGATTTTGGATATCAAAAAGTTGGTTTGACCCACCATTCGAGTCTGCCTGGCTCTTCTAGTAGGGTGGCTACAATGGAGAAGTTTTATCAAATTCAAGGATCTGTTCCATGTAAAATTCGAGCCAAGAGAGGTTTTGCCACTCATCCGAGAAGCATTGCAGAGAGGGAAAGAAGAACTCGAATTAGCGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAAACAGACAAGCAAACAAGCACTGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACCTGCAGAAACAAGTTAAGATGCTTAGAGATACTAGGGCAAAGTGCACTTGTACAAGCAATCAGAAGCACTGA 1305 0.4215 MSIVYSHAVKYSQGETRMNPEMDSNIGQHCHQQNSGLMRYRSAPSSLLTSLANNNNINNNTTTNGCVNGKAFRSVHNHHQQQRYPPSTSSEMETMLAKLISSNNSEPLQVKEEAVASVSQPPQQHNGYSYGSSPQMMYQTQQIQGLPMPNGSLGNAFDGSFSAVNSLASQNSTQPRLGASTNCNNLIRQKSSPAGFFSNYSVDNAMRDVASFRGCDVSNGQAITSSSGLHGGTLNLSSRPSSCSTRMPQIAENGNEGVEGNYVESRNLRNDNINSTKCYMPSFTTDFWDGSSFSPRTASNNGEISFSTSNAMDIQGEDFGYQKVGLTHHSSLPGSSSRVATMEKFYQIQGSVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKTDKQTSTADMLDLAVEYIKDLQKQVKMLRDTRAKCTCTSNQKH* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g2012 434 Pfam Helix-loop-helix DNA-binding domain 368 413 IPR011598 GO:0046983
Gso12g2012 434 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 26 432 - -
Gso12g2012 434 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 26 432 - -
Gso12g2012 434 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 365 425 IPR036638 GO:0046983
Gso12g2012 434 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 362 412 IPR011598 GO:0046983
Gso12g2012 434 SMART finulus 368 418 IPR011598 GO:0046983
Gso12g2012 434 Gene3D - 364 433 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g2012 Gso-Chr12 44240304 44244358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g2012 22 418 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 34.845 7.37e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso12g2012 HLH 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g2012 - - gmx:100797629 858.596