Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso12g2005 | ATGACAGATCCTCAGTCCAATTTGTTCCATGAATGGTTCAACTTCATGCTCCTCCACCCTCACTACTCCTCTTCTCAATCCAATTACCCTTTTGCTAATAATTACTCAAACAACAACAGGTTTGGAATTCAATTACAACAAGGAGCAGCCTCATCTTCATCTTCATCTTTCTATGCAGCTCCTCCTTCTTCCCCTCCTCTCAGAGAGGCCCTTCCTCTAATCAACAAGATAAGCCTCAAAAGTAGTGAGCAGCACCAACAAAATGAACCCTCCTCAAATGTTGTAGAGGAGAAAGAAGAGGACAAGAACAAAGTGGACAACAACAAACATCATGAGAGTGGTGAAGATGGTGATGAAGAAACTGTGACTGTTGCCCTACACATAGGGCTTCCTAGAATGGATACTTCTTCTTCTGATCTGGGGCCATCAAGGGTGGTCTCAACAACTTGTATGGAAATTAGTGAAAAAGAGGAAGTGAACATGATTTCTAAACACCCTTTGGATAATAGATTGAACAAGGGTCAGTATTGGATTCCCACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTCCCATGTCCTGTGTGCTCTAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTAAAAGGAACACAACCAACAGCTATGCTAAGACTTCCATGCTTTTGTTGTGCGCCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACTCTTCAAACACATTACAAGAGGAAGCATGGCATAAAGCCCTACATGTGCAGAAAATGTGGCAAAGCATTTGCAGTGAAAGGTGATTGGAGAACACATGAGAAGAACTGTGGCAAAATATGGTACTGTTTATGTGGGTCCGATTTCAAACACAAAAGGTCCCTGAAAGACCACATCAAGGCCTTTGGCTTTGGCCATGGATCTTTTGGCATTGATTGCTTGCAAGAAGAAGATGAAGCAGCCTCTGATATTGAACATGATGGGGAGAGTTCAATGTGA | 1059 | 0.4287 | MTDPQSNLFHEWFNFMLLHPHYSSSQSNYPFANNYSNNNRFGIQLQQGAASSSSSSFYAAPPSSPPLREALPLINKISLKSSEQHQQNEPSSNVVEEKEEDKNKVDNNKHHESGEDGDEETVTVALHIGLPRMDTSSSDLGPSRVVSTTCMEISEKEEVNMISKHPLDNRLNKGQYWIPTPSQILIGPTQFPCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGFGHGSFGIDCLQEEDEAASDIEHDGESSM* | 353 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso12g2005 | 352 | MobiDBLite | consensus disorder prediction | 92 | 120 | - | - | |
Gso12g2005 | 352 | MobiDBLite | consensus disorder prediction | 81 | 120 | - | - | |
Gso12g2005 | 352 | PANTHER | ZINC FINGER PROTEIN WIP2 | 1 | 347 | IPR043584 | GO:0003700|GO:0010468 | |
Gso12g2005 | 352 | Gene3D | Classic Zinc Finger | 253 | 324 | - | - | |
Gso12g2005 | 352 | SUPERFAMILY | beta-beta-alpha zinc fingers | 259 | 295 | IPR036236 | - | |
Gso12g2005 | 352 | Pfam | C2H2-type zinc finger | 191 | 210 | - | - | |
Gso12g2005 | 352 | SMART | c2h2final6 | 191 | 213 | IPR013087 | - | |
Gso12g2005 | 352 | SMART | c2h2final6 | 275 | 295 | IPR013087 | - | |
Gso12g2005 | 352 | Gene3D | Classic Zinc Finger | 190 | 213 | - | - | |
Gso12g2005 | 352 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 191 | 218 | IPR013087 | - | |
Gso12g2005 | 352 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 275 | 295 | IPR013087 | - | |
Gso12g2005 | 352 | SUPERFAMILY | beta-beta-alpha zinc fingers | 187 | 213 | IPR036236 | - | |
Gso12g2005 | 352 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 193 | 213 | IPR013087 | - | |
Gso12g2005 | 352 | PANTHER | ZINC FINGER PROTEIN WIP2-LIKE | 1 | 347 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso12g2005 | Gso-Chr12 | 44168576 | 44172229 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso12g2005 | 1 | 345 | C2H2 Transcription Factor Family | AT3G57670 | 53.034 | 1.90e-123 | 358 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Gso12g2005 | zf-C2H2_6 | 2.8e-05 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso12g2005 | - | - | gmx:100794446 | 715.687 |