Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g2005 ATGACAGATCCTCAGTCCAATTTGTTCCATGAATGGTTCAACTTCATGCTCCTCCACCCTCACTACTCCTCTTCTCAATCCAATTACCCTTTTGCTAATAATTACTCAAACAACAACAGGTTTGGAATTCAATTACAACAAGGAGCAGCCTCATCTTCATCTTCATCTTTCTATGCAGCTCCTCCTTCTTCCCCTCCTCTCAGAGAGGCCCTTCCTCTAATCAACAAGATAAGCCTCAAAAGTAGTGAGCAGCACCAACAAAATGAACCCTCCTCAAATGTTGTAGAGGAGAAAGAAGAGGACAAGAACAAAGTGGACAACAACAAACATCATGAGAGTGGTGAAGATGGTGATGAAGAAACTGTGACTGTTGCCCTACACATAGGGCTTCCTAGAATGGATACTTCTTCTTCTGATCTGGGGCCATCAAGGGTGGTCTCAACAACTTGTATGGAAATTAGTGAAAAAGAGGAAGTGAACATGATTTCTAAACACCCTTTGGATAATAGATTGAACAAGGGTCAGTATTGGATTCCCACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTCCCATGTCCTGTGTGCTCTAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTAAAAGGAACACAACCAACAGCTATGCTAAGACTTCCATGCTTTTGTTGTGCGCCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACTCTTCAAACACATTACAAGAGGAAGCATGGCATAAAGCCCTACATGTGCAGAAAATGTGGCAAAGCATTTGCAGTGAAAGGTGATTGGAGAACACATGAGAAGAACTGTGGCAAAATATGGTACTGTTTATGTGGGTCCGATTTCAAACACAAAAGGTCCCTGAAAGACCACATCAAGGCCTTTGGCTTTGGCCATGGATCTTTTGGCATTGATTGCTTGCAAGAAGAAGATGAAGCAGCCTCTGATATTGAACATGATGGGGAGAGTTCAATGTGA 1059 0.4287 MTDPQSNLFHEWFNFMLLHPHYSSSQSNYPFANNYSNNNRFGIQLQQGAASSSSSSFYAAPPSSPPLREALPLINKISLKSSEQHQQNEPSSNVVEEKEEDKNKVDNNKHHESGEDGDEETVTVALHIGLPRMDTSSSDLGPSRVVSTTCMEISEKEEVNMISKHPLDNRLNKGQYWIPTPSQILIGPTQFPCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGFGHGSFGIDCLQEEDEAASDIEHDGESSM* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g2005 352 MobiDBLite consensus disorder prediction 92 120 - -
Gso12g2005 352 MobiDBLite consensus disorder prediction 81 120 - -
Gso12g2005 352 PANTHER ZINC FINGER PROTEIN WIP2 1 347 IPR043584 GO:0003700|GO:0010468
Gso12g2005 352 Gene3D Classic Zinc Finger 253 324 - -
Gso12g2005 352 SUPERFAMILY beta-beta-alpha zinc fingers 259 295 IPR036236 -
Gso12g2005 352 Pfam C2H2-type zinc finger 191 210 - -
Gso12g2005 352 SMART c2h2final6 191 213 IPR013087 -
Gso12g2005 352 SMART c2h2final6 275 295 IPR013087 -
Gso12g2005 352 Gene3D Classic Zinc Finger 190 213 - -
Gso12g2005 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 191 218 IPR013087 -
Gso12g2005 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 275 295 IPR013087 -
Gso12g2005 352 SUPERFAMILY beta-beta-alpha zinc fingers 187 213 IPR036236 -
Gso12g2005 352 ProSitePatterns Zinc finger C2H2 type domain signature. 193 213 IPR013087 -
Gso12g2005 352 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g2005 Gso-Chr12 44168576 44172229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g2005 1 345 C2H2 Transcription Factor Family AT3G57670 53.034 1.90e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso12g2005 zf-C2H2_6 2.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g2005 - - gmx:100794446 715.687