Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g2004 ATGAATGATGGTAGACAAATGGGGGTGAATTACGTAGACGCTGGGTTCCCTTATGCTGTTAATGAAAACTTCGTGGATTTCTTCCAAGGATTCACTCCTGTGCCCGTCAATTATGCCTTTGCTGGCTCAATTCCTGATCAGGAAAGTGTCTACTGGTCAATGAACATGAATCCCTATAAGTTTGGATTGTCTGGCCCTGGGAGTACATCTTACTATAGTTCTTATGAGGTAAATGGTCATTTGCCGAGAATGGAGATTGATAGGGCTGAGTGGGAATATCCTTCGACAATTACCACTGTGGAAGAGCCTGCTACAACAGATTCTCCACCTAGAAGAGATGGAGTCACGAACATGCAGACCATCCCTGAAGAATGCAGTCCAAATCATCATGAGTCCAATAGTAGTAGCCAGGTCATATGGCAAGACAACATCGATCCTGATAATATGACTTATGAGGAACTACTGGACCTGGGAGAGGCAGTTGGGACTCAAAGCCGGGGTCTTTCCCAAGAGCTTATTGATATGCTTCCAACCTCAAAGTACAAATTTGGTAACTTATTCAAAAGAAAAAATTCTGGGAAAAGGTGTGTAATTTGTCAGATGACATACAGAAGAGGTGACCAACAAATGAAATTACCATGCAGCCATGTCTATCACGGTGAATGCATCACCAAGTGGCTTAGCATTAACAAGAAATGTCCTGTTTGCAACACCGAGGTTTTTGGCGAGGAATCAACGCATTAG 744 0.4315 MNDGRQMGVNYVDAGFPYAVNENFVDFFQGFTPVPVNYAFAGSIPDQESVYWSMNMNPYKFGLSGPGSTSYYSSYEVNGHLPRMEIDRAEWEYPSTITTVEEPATTDSPPRRDGVTNMQTIPEECSPNHHESNSSSQVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLSQELIDMLPTSKYKFGNLFKRKNSGKRCVICQMTYRRGDQQMKLPCSHVYHGECITKWLSINKKCPVCNTEVFGEESTH* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g2004 247 ProSiteProfiles Zinc finger RING-type profile. 196 237 IPR001841 -
Gso12g2004 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BIG BROTHER 1 247 - -
Gso12g2004 247 Pfam Ring finger domain 195 237 IPR001841 -
Gso12g2004 247 SUPERFAMILY RING/U-box 195 241 - -
Gso12g2004 247 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 247 IPR033276 GO:0004842|GO:0016567|GO:0046621
Gso12g2004 247 SMART ring_2 196 236 IPR001841 -
Gso12g2004 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 241 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g2004 Gso-Chr12 44123452 44130934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g2004 9 247 C3H Transcription Factor Family AT3G63530 54.393 2.59e-98 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g2004 K19045 - gmx:100785290 518.464