Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g2002 ATGAGGAAACCTGATCTGATGGCCAACAAGGACAAAATGAACAACATTAAGAGCAAGTTGAGAAAAGGGTTGTGGTCACCAGATGAAGATGAGAGGCTCGTAAGGTACATGCTGACAAATGGACAAGGGTGTTGGAGTGACATTGCTAGGAATGCTGGTCTTCAAAGGTGTGGCAAAAGTTGCCGTCTTCGTTGGATCAATTACTTGAGACCTGACCTCAAGCGTGGTGCATTCTCACCTCAAGAGGAAGATCTCATCGTTCATTTGCACTCCATTCTTGGCAATAGGTGGTCTCAGATTGCAGCGCGTCTCCCTGGCCGCACAGACAATGAGATTAAGAATTTCTGGAACTCCACATTGAAGAAAAGGTTGAAAACTAACACTTCCACTCCCTCACTAAACAACAGCACTGGCTCATCAGAGTCTAATAAGGATGTTTTGAGTGGGATCATGCCCTTTAATGAACATGACATCATGACCATGTGCATGGATTCCTCTTCGTCCATATCATCCATGCAAGCAATGGTTTTGCCTGACCAATTTGACCCTTTTTTCATGTTGGCAAATAATCAGTGTGACATGACTAATGTTTCATCTGACTTTTCCAACATGCCTGCTGCATGCTTGACTCAAATTGGCATGGTAGATGGGCATCAAGGGAATTATGGGATATTGGAGCCAAATAAAATGGGGTCAGGAATAGACTTCTCCCTTCCTTCACTAGAAAGTAGAAGCATTGAAAGCAATAGTGTCCCAATTGATGTGAAAAGCCATAACAACCACTTCAATTATGGTTCCTTCAAGAACACTGATAAGATTCAGGGCTCCAAAGTGGAGGACTTGATCGGGTTTGGAAATCATGGCCAAGGGGAAAATTTAAAAATGGGAGAGTGGGATTTGGAGAATTTAATGCAAGACATAACCTCTTTTCCTTTCCTTGATTTTTAA 948 0.4262 MRKPDLMANKDKMNNIKSKLRKGLWSPDEDERLVRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIVHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKTNTSTPSLNNSTGSSESNKDVLSGIMPFNEHDIMTMCMDSSSSISSMQAMVLPDQFDPFFMLANNQCDMTNVSSDFSNMPAACLTQIGMVDGHQGNYGILEPNKMGSGIDFSLPSLESRSIESNSVPIDVKSHNNHFNYGSFKNTDKIQGSKVEDLIGFGNHGQGENLKMGEWDLENLMQDITSFPFLDF* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g2002 315 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Gso12g2002 315 SMART sant 21 71 IPR001005 -
Gso12g2002 315 SMART sant 74 122 IPR001005 -
Gso12g2002 315 CDD SANT 77 120 IPR001005 -
Gso12g2002 315 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Gso12g2002 315 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Gso12g2002 315 CDD SANT 25 69 IPR001005 -
Gso12g2002 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Gso12g2002 315 Gene3D - 19 75 - -
Gso12g2002 315 PANTHER TRANSCRIPTION FACTOR MYB83 1 315 - -
Gso12g2002 315 PANTHER MYB DOMAIN PROTEIN 55 1 315 - -
Gso12g2002 315 Gene3D - 76 147 - -
Gso12g2002 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Gso12g2002 315 MobiDBLite consensus disorder prediction 126 145 - -
Gso12g2002 315 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Gso12g2002 315 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g2002 Gso-Chr12 44104994 44107686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g2002 1 315 MYB Transcription Factor Family AT3G08500 48.023 2.45e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso12g2002 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g2002 K09422 - gmx:100784755 629.402