Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1999 ATGAAATCGCTAACTGTTAATACTGAAGATTCTTTTTCCAGTTTGCTGGAACTTGCTTCTAACAATGATATTGAAGGCTTCAAGGTGCTTTTAGAGAAAGATTCTTCTTCGATCAATGAGGTTGGGCTCTGGTATGGCCGGCAAAACGGATCGAAGCAATTTGTTCTTGAGCACAGAACCCCTTTGATGGTTGCTGCAACTTATGGTAGCATTGATGTTATGAAGATTATACTGTTGTGCCCCGAGGCAGATGTAAATTTCGCGTGTGGGGCGAACAAAACCACTGCTCTTCACTGTGCTGCTTCTGGTGGGTCTGCCAATGCTGTTGATGCTGTGAAGATTCTTTTATCGGCTGGGGCCGATGTGAATGGCGTGGATGCAAATGGGAATCGCCCTATTGATGTGATTGCTGTTCCTCCGAAGCTGCAAGGTGCAAAAGCCGTTCTCGAGGAACTTCTCTCGGACAGTGCTTCTGAAGGCTCAATTGGTGAATTCTCTGTCCCAGTGTCTGTTAATACTTCCAGTCTGGGTTCTCCTGGCCATTCCTCGAATGGGATGCCGTATACTCCTTCTTCCTCACCGCCATCTCCTGTGGTGGCAAAGTTTACTGATGCAGCTGTTTGCTCTTTGTCGGAGAAGAAGGAATACCCAATTGATCCATCGCTGCCTGATATAAAGAACAGCATATATGCGACCGATGAGTTTCGGATGTTTTCGTTCAAGGTGAGGCCTTGTTCCCGGGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCCGGAGAGAATGCTCGGAGGAGAGACCCCAGGAAGTTCCATTACAGCTGTGTGCCATGCCCTGATTTTAGGAAAGGGGCTTGTAGGCGCGGGGACATGTGTGAATATGCTCATGGGGTGTTTGAGTGCTGGCTGCACCCGGCTCAGTATCGGACACGCCTCTGCAAAGATGGTACCAGTTGCAATCGAAGGGTGTGTTTTTTTGCTCACACTGCGGAGGAGCTTCGTCCGCTGTATGTGTCCACTGGATCTGCTGTCCCTTCGCCCAGGTCATCTGCCTCGGCTCCTAATGTCATGGACATGGCTGCTGCGATGAGCCTTTTGCCGGGCTCGCCTTCTTCGGTCTCTTCCATGTCGCCATCCCACTTTGGGCAACCAATGTCCCCATCTGCAAATGGCATGTCACTGTCTTCTGCTTGGGCACAGCCAAATGTGCCAGCTCTTCATTTACCAGGAAGCAATCTTCAGTCTAGTCGATTGAGGTCTTCCCTTAGTGCCCGCGACATGCCACCAGACGACTTGAACATGATGTCTGATCTTGATGGCCAGCAGCAGCATCCTTTGAATGACTTGAGCTGTTACTTACAGCCGCGGCCTGGTGCTGGTTCTGTGAGTAGATCTGGTCGGTCCAAGATCCTAACTCCATCAAATCTTGAAGATCTCTTTTCTGCTGAGATTTCTTCATCTCCCCGGTACTCTGATCCAGCAGCGGGTTCCGTGTTTTCCCCTACGCACAAATCAGCTGTTCTCAATCAGTTTCAACAGCTCCAAAGTATGTTATCACCTATAAATACTAACTTGCTATCTCCTAAGAATGTTGAGCATCCTCTTTTACAGGCTTCCTTTGGTGTCTCTCCATCGGGTAGGATGTCACCAAGAAGTGTTGAACCAATCTCTCCAATGAGCTCTCGCATATCGGCATTTGCTCAGCGCGAAAAACAGCAGCAGCAGCAGCTGCGCAGTCTCAGTTCGAGAGACCTCGGTGCCAACAGTCCTGCCTCACTTGTTGGCTCCCCTGCAAACCCTTGGTCAAAGTGGGGATCTCCTAATGGGAAAGCTGATTGGTCAGTAAATGGAGACACACTTGGTCGTCAGATGCGAAGATCATCCTCGTTTGAGCTCAAGAACAACGGGGAAGAGCCTGATCTCTCTTGGGTCCAATCTCTGGTGAAGGAATCCCCACCTGAGATGATCAAAGAGAAGTTTGCATCTCCTATGCCTACTGCATCTGCTGATGGACCGAATTCAAATTCCCAAATTGAATCCATTGACCATTCTGTTTTAGGAGCCTGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAG 2109 0.4917 MKSLTVNTEDSFSSLLELASNNDIEGFKVLLEKDSSSINEVGLWYGRQNGSKQFVLEHRTPLMVAATYGSIDVMKIILLCPEADVNFACGANKTTALHCAASGGSANAVDAVKILLSAGADVNGVDANGNRPIDVIAVPPKLQGAKAVLEELLSDSASEGSIGEFSVPVSVNTSSLGSPGHSSNGMPYTPSSSPPSPVVAKFTDAAVCSLSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASAPNVMDMAAAMSLLPGSPSSVSSMSPSHFGQPMSPSANGMSLSSAWAQPNVPALHLPGSNLQSSRLRSSLSARDMPPDDLNMMSDLDGQQQHPLNDLSCYLQPRPGAGSVSRSGRSKILTPSNLEDLFSAEISSSPRYSDPAAGSVFSPTHKSAVLNQFQQLQSMLSPINTNLLSPKNVEHPLLQASFGVSPSGRMSPRSVEPISPMSSRISAFAQREKQQQQQLRSLSSRDLGANSPASLVGSPANPWSKWGSPNGKADWSVNGDTLGRQMRRSSSFELKNNGEEPDLSWVQSLVKESPPEMIKEKFASPMPTASADGPNSNSQIESIDHSVLGAWLEQMQLDQLVV* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1999 702 Gene3D - 274 337 - -
Gso12g1999 702 SMART ANK_2a 57 87 IPR002110 GO:0005515
Gso12g1999 702 SMART ANK_2a 10 40 IPR002110 GO:0005515
Gso12g1999 702 SMART ANK_2a 92 124 IPR002110 GO:0005515
Gso12g1999 702 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 1 700 - -
Gso12g1999 702 Gene3D - 3 159 IPR036770 -
Gso12g1999 702 PANTHER UNKEMPT FAMILY MEMBER 1 700 IPR045234 -
Gso12g1999 702 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Gso12g1999 702 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Gso12g1999 702 MobiDBLite consensus disorder prediction 410 424 - -
Gso12g1999 702 SUPERFAMILY Ankyrin repeat 6 139 IPR036770 -
Gso12g1999 702 MobiDBLite consensus disorder prediction 569 605 - -
Gso12g1999 702 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 299 IPR000571 GO:0046872
Gso12g1999 702 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515
Gso12g1999 702 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Gso12g1999 702 MobiDBLite consensus disorder prediction 569 612 - -
Gso12g1999 702 Pfam Ankyrin repeats (3 copies) 19 123 IPR002110 GO:0005515
Gso12g1999 702 MobiDBLite consensus disorder prediction 371 396 - -
Gso12g1999 702 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Gso12g1999 702 ProSiteProfiles Zinc finger C3H1-type profile. 279 301 IPR000571 GO:0046872
Gso12g1999 702 MobiDBLite consensus disorder prediction 410 433 - -
Gso12g1999 702 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1999 Gso-Chr12 44075406 44079136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1999 9 699 C2H2 Transcription Factor Family AT5G12850 55.070 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso12g1999 Ank_2 5.6e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1999 - - gmx:100784225 1343.95