Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1995 ATGCCAGGGAAACCTGACACTGATGATTGGCGTGTAGAGCGTGGGGAGCAGATTCAGTTTCAGTCTTCCATTTACTCTCATCATCAGCCTTGGTGGCGCGGAGTGGGGGAAAATGCCTCCAAATCATCTTCAGATGATCAGTTAAATGGTTCAATCGTGAATGGTATCACGCGGTCTGAGACCAATGATAAGTCAGGCGGAGGTGTTGCCAAAGAATACCAAAACATCAAACATGCCATGTTGTCAACCCCATTTACCATGGAGAAACATCTTGCTCCAAATCCCCAGATGGAACTTGTTGGTCATTCAGTTGTTTTAACATCTCCTTATTCAGATGCACAGTATGGTCAAATCTTGACTACTTACGGGCAACAAGTTATGATAAATCCTCAGTTGTATGGAATGCATCATGCTAGAATGCCTTTGCCACTTGAAATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCACGTGCTAAGGCTGAGATTGAAAAGAAAGTAATCAAAAACAGGAAGCCATACCTCCATGAATCCCGTCACCTTCATGCAATGAGAAGGGCAAGAGGCAACGGTGGTCGCTTTCTCAACACAAAGAAGCTTGAAAATAACAATTCTAATTCCACTTCAGACAAAGGCAACAATACTCGTGCAAACGCCTCAACAAACTCGCCTAACACTCAACTTTTGTTCACCAACAATTTGAATCTAGGCTCATCAAATGTTTCACAAGCCACAGTTCAGCACATGCACACAGAGCAGAGTTTCACTATAGGTTACCATAATGGAAATGGTCTTACAGCACTATACCGTTCACAAGCAAATGGGAAAAAGGAGGGAAACTGCTTTGGTAAAGAGAGGGACCCTAATGGGGATTTCAAATAA 912 0.4309 MPGKPDTDDWRVERGEQIQFQSSIYSHHQPWWRGVGENASKSSSDDQLNGSIVNGITRSETNDKSGGGVAKEYQNIKHAMLSTPFTMEKHLAPNPQMELVGHSVVLTSPYSDAQYGQILTTYGQQVMINPQLYGMHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAEIEKKVIKNRKPYLHESRHLHAMRRARGNGGRFLNTKKLENNNSNSTSDKGNNTRANASTNSPNTQLLFTNNLNLGSSNVSQATVQHMHTEQSFTIGYHNGNGLTALYRSQANGKKEGNCFGKERDPNGDFK* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1995 303 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 23 297 IPR001289 GO:0003700|GO:0006355
Gso12g1995 303 MobiDBLite consensus disorder prediction 199 242 - -
Gso12g1995 303 ProSiteProfiles NF-YA/HAP2 family profile. 147 207 IPR001289 GO:0003700|GO:0006355
Gso12g1995 303 PANTHER TRANSCRIPTION FACTOR Y SUBUNIT A-1, PUTATIVE-RELATED 23 297 - -
Gso12g1995 303 ProSitePatterns NF-YA/HAP2 subunit signature. 152 172 IPR018362 GO:0003677|GO:0016602
Gso12g1995 303 MobiDBLite consensus disorder prediction 36 64 - -
Gso12g1995 303 MobiDBLite consensus disorder prediction 206 242 - -
Gso12g1995 303 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 149 204 IPR001289 GO:0003700|GO:0006355
Gso12g1995 303 MobiDBLite consensus disorder prediction 36 69 - -
Gso12g1995 303 PRINTS CCAAT-binding transcription factor subunit B signature 150 172 IPR001289 GO:0003700|GO:0006355
Gso12g1995 303 PRINTS CCAAT-binding transcription factor subunit B signature 181 204 IPR001289 GO:0003700|GO:0006355
Gso12g1995 303 SMART cbf3 146 207 IPR001289 GO:0003700|GO:0006355
Gso12g1995 303 Gene3D - 147 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1995 Gso-Chr12 44015080 44021481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1995 29 249 CCAAT-HAP2 Transcription Factor Family AT5G12840 41.767 1.63e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gso12g1995 CBFB_NFYA 3.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1995 K08064 - gmx:100782085 607.06