Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1989 ATGGAGTCCGCTGATGATGTATCTGCTTCTAAACGCCCCCTACCAACCGGATTTTCCCCTGGCCCTGATGGACCGAAAAGACTGAGGTTATCTAGTGATAGCCTGCCATACCCAGCATGTGACCAAATTGAACCAAAGACACCTAAGATTCCAAATGTTGTTGACTACAGCAATCCATTTGCAATAACTGATATTTTAGATCGTTTAGAGAATGGAAAGTTTGGAAGTGTCACAAAGGACATAGAGGCCCTTATAGCCCTAAAAATGCAAATAATGGGCCCTTACTTTGCAAAATATCCCATACTTGTTAATCAATTATTGAAAGTGGTAACGCATCACGATGAAGAAACTCCCAAGTTGGAAAATCAACAAGTTACTGGTTTGACACATCAAAGTGTCATAGATTTGGAGGGGGAATACACTGAAAAGGATGTTCCTGCAGTACCAAATACTGTTGTGATTATTGATTCAGATGAGGAAGATGATAGAGATAAAAAATCTGTCATTCCATTTCATGAAGTTGTGTTGCCAAGAAAAGTTGCACCATCTCCTGCATTGAAGGTGATTGGGTATCACACTTACCTGGGAGAAAGCAACGATCTAAAAATTGAGATAAATATGGCTGATAAAGGTAATAACACTAGGAGCAATAAAGGTGTTTATGTTGGTGTACAGGGAGAGGAAGAAGATAAGGCTGATACTGAGGATGATGGTCTACAAGATATTTGGAAGGAGATGTCAATGGCAATAGAATGTTCCAAAGATGTTTCTGAGGATCCTGAGCCGGAAGAAGAAGAGGAGGAAGATGATAATTGTGATCATTCTTTTGTCTTAAAAGATGATCTTGGCTATGTTTGTCGCGTTTGTGGGGTTATTGACCGAAAAATTGAAACCATATTTGAGTTTCAGTACAAGGTTAAACGGAGCACAAGAACTTATGCATCTGATTCATGGAATTCCAAAGGAAAAGCAGATGTATTTGGAATTAATGTTGCTGAAGATGACCTCGTAGTAACTGATATCGCAGCACATCCCAGACACATGAAACAGATGAAACCCCATCAAGTTGAAGGATTCAATTTTCTTGTTAGAAATCTTGCGGGTGACCATCCTGGTGGGTGCATCTTAGCCCATGCTCCTGGATCTGGGAAAACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGCAAGTATCCTAATGCAAGACCTTTAGTGGTGCTTCCTAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCAAACATGGCAAGTTGAGGACATACCTTTATATGACCTTTACACAGTGAAGGCAGACAGTAGAAGTCAACAACTAGAAGTGTTGAAGCAATGGATGGAGCAGAAGAGTATCCTTTTCTTAGGATACAAACAGTTCTCCTCTATTGTTTGTGATAACGGGACCAACAACACATCTTTATCTTGCCAGGAGATTTTACTCAAGATTCCTACGATTCTTATCTTAGATGAGGGACACAATCCTAGGAATGAAAATACTGATATGGTACAGTCACTTGCCAAAGTTCAAACGGCTAGAAAAGTTGTACTATCAGGAACCCTTTATCAAAATCATGTCAGGGAGGTATTCAACATTTTAAATCTCGTTCGACCAAAATTTTTGAAGATGGAAACATCAAGGCCGATTGTGAGGCGCATTCATAGTAGAGTTCACATACCTGGGGTGAGAAGCTTCTATGATTTAGTAGAAAACACTTTGCAGAAGGACACTGATTTTAAAAGGAAAATAGCTGTTATACAAGATTTGCGGGAGATGACGAGCAAGGTACTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCCGGTCTTGTTGATTTTACTGTGGTGCTCACTCTTAGCCCTAGACAGAAGCCTGAAATTCAGAAATTAAAAAAGCTATCTAGAAGAAAGTTCAAGATAAATTCTGTAGGCAGTGCTGTCTATCTTCACCCCAAACTTAAACCACTAGCAGAAAATTGTGGTGAAAATTCTACATCTGATAATATAATGGATGATTTGATAGAGAAACTAGACATGAGAGATGGTGTGAAGTCAAAATTCTATTACAACATGCTAAATCTGTGTGAATCAGCAGGGGAGAAGCTTCTAGTTTTCAGTCAGTATCTGTTACCTTTGAAATATTTAGAAAGGTTGACTATGAAATGGAAAGGCTGGAGTCTTGGAAGAGAAATTTTTGTAATCTCAGGAGAATCAAGCTCTGAGCAACGAGAATGGTCCATGGAAAAATTTAACAATTCTCCTGATGCCAGAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAGGGTATATCATTGGTTGGGGCTTCTCGAATAATTATTTTGGACGTTCATCTCAATCCATCAGTTACACGTCAAGCTATAGGTCGTGCATTCAGACCTGGCCAGATGAAGAAGGTGTTTGTGTATCGTTTGGTATCTGCTGATTCTCCGGAAGAGGAAGATCACAATACTTGTTTCAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAATGAGTACTGCGGTGATCGAGCTTTTGAAGTTGAGGCAGTTGAGGTGAAAGAGTGTGGTGATCTATTTCTTGAAAGTCCACTTTTAGGGGAGGATGTAAAAGCTTTGTATAAAAGGTGA 2652 0.3918 MESADDVSASKRPLPTGFSPGPDGPKRLRLSSDSLPYPACDQIEPKTPKIPNVVDYSNPFAITDILDRLENGKFGSVTKDIEALIALKMQIMGPYFAKYPILVNQLLKVVTHHDEETPKLENQQVTGLTHQSVIDLEGEYTEKDVPAVPNTVVIIDSDEEDDRDKKSVIPFHEVVLPRKVAPSPALKVIGYHTYLGESNDLKIEINMADKGNNTRSNKGVYVGVQGEEEDKADTEDDGLQDIWKEMSMAIECSKDVSEDPEPEEEEEEDDNCDHSFVLKDDLGYVCRVCGVIDRKIETIFEFQYKVKRSTRTYASDSWNSKGKADVFGINVAEDDLVVTDIAAHPRHMKQMKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDLYTVKADSRSQQLEVLKQWMEQKSILFLGYKQFSSIVCDNGTNNTSLSCQEILLKIPTILILDEGHNPRNENTDMVQSLAKVQTARKVVLSGTLYQNHVREVFNILNLVRPKFLKMETSRPIVRRIHSRVHIPGVRSFYDLVENTLQKDTDFKRKIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVVLTLSPRQKPEIQKLKKLSRRKFKINSVGSAVYLHPKLKPLAENCGENSTSDNIMDDLIEKLDMRDGVKSKFYYNMLNLCESAGEKLLVFSQYLLPLKYLERLTMKWKGWSLGREIFVISGESSSEQREWSMEKFNNSPDARVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQMKKVFVYRLVSADSPEEEDHNTCFKKELISKMWFEWNEYCGDRAFEVEAVEVKECGDLFLESPLLGEDVKALYKR* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1989 883 Gene3D - 322 563 IPR038718 -
Gso12g1989 883 Gene3D - 614 870 IPR027417 -
Gso12g1989 883 SMART helicmild6 722 807 IPR001650 -
Gso12g1989 883 MobiDBLite consensus disorder prediction 1 35 - -
Gso12g1989 883 SMART ultradead3 347 557 IPR014001 -
Gso12g1989 883 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 696 859 IPR001650 -
Gso12g1989 883 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 24 883 IPR044567 GO:0080188
Gso12g1989 883 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 365 544 IPR014001 -
Gso12g1989 883 PANTHER PROTEIN CHROMATIN REMODELING 35 24 883 - -
Gso12g1989 883 Pfam SNF2-related domain 371 585 IPR000330 GO:0005524|GO:0140658
Gso12g1989 883 CDD SF2_C_SNF 696 818 - -
Gso12g1989 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 546 IPR027417 -
Gso12g1989 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 491 845 IPR027417 -
Gso12g1989 883 Pfam Helicase conserved C-terminal domain 698 806 IPR001650 -
Gso12g1989 883 MobiDBLite consensus disorder prediction 257 271 - -
Gso12g1989 883 MobiDBLite consensus disorder prediction 253 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1989 Gso-Chr12 43952570 43959802 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1989 704 825 RAD5 or RAD16-like Gene Family AT5G43530 35.246 1.16e-13 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso12g1989 SNF2_N 3.5e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1989 K10875 - gmx:100780454 1746.87