Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1987 ATGGGGAAGATAGAAAAAAACAAAAACACCTTATTGACATCACCTTTTCTATCATCCTTCAAGTCATCATCATCATCATCTTCTTCTTCTTCTTCTTTGATGATGGCTACCCTCCTGGTCATTCTCTTGGCCTTGTTTTCTCCTTCACTAGGCCTTCCCTTAGCATCTTTCCAACCAAAAGACAATTTCCTCATTGATTGTGGTGCTGAAAACACAGTGACTCTCCCTGATGGAAGACAATTCAAATCAGACCCTCAAGCCAGATCCTTCTTGCAAGCCAATGATGAGTACAAAGTCTCAGCAAATGATGTGAATTTCCCTTCACCTATATACTCAAATGCAAGGATCTTCATTCAGGAAGCTAAGTACTCCTTCCATTTGGTTCAACCGGGTTTCCATTGGATTCGGCTTTATTTCTACCCCATCAAGAACAACATCTTTGATCTCCAGAAGGCAAGTTTTTCTGTCTACACAGATACCTATGTGCTACTCCACAGCTTCAATGTCAACAATACTGACAAGCCAATCTTCAAGGAGTACCTCATCAATGCAACCGAGCCTCAATTCACCATGTCCTTCATTCCCCTCAAGAACTCAGCTGCATTCATCAATGCCATTGAGGTTGTCTCAGCTCCTGATAACCTGATCTTCGACACCGGGGCCGGCCTTTTCCCCGTTGGCGAGTTCAGTGGCCTCACAACTTACGGCTTCCAGCCTGTTTACAGGGTCAACAATGGAGGGCCTCTCATCACCTCATCAAATGACACCCTTGGAAGGACTTGGGAAACTGATGAACCTTACCTCACAAACAAGAACTTGGCCAAGAGTGCTTCGGTGGCCACCTCCGCGGTTAAGTTCCCACAAGACAATCCTTCAATTTCTCCCATGATTGCACCACAAACTGTGTATGCCTCTGCCACTGAGATGGGTGATGCTGGTGTGAATCAGCCAAATTTCAATGTGTCATGGAAATTTGATGTGGACACCTCTTTTAGCTACCTTGTTAGGCTTCACTTCTGTGACATTGTTAGCAAAGGGCTCAATGAACTCTACTTTAATGTTTATGTTAATGGGAAAGTGGCAATCAATAACTTGGATTTATCAGCCATCACTGGTGCCTTGTCAACCCCATATTACAAAGACATTGTGGTGAATGCAACATTGATGTCTGAGGGGCTAACAGTTCAGGTTGGTCCAGCAAATGCTGATGGTGGAAATGCCAATGCCATTGTGAATGGCATAGAGGTCTTGAAGATGAGCAGCTCTGTGAACAGTTTGGATGGAGAATTTGGTGTTGATGGAAGAAGTGTTAATGGTTCTAACCGCGGCACGGTGGCAGCCGTTGGATTTGCCATGATGTTTGGAGCCTTTGTGGGTCTTGGTGCTATGGTGATCAAGTGGCACAAGAGGCCTCAGGACTGGCAAAAGAGGAACAGCTTCTCCTCATGGTTGCTTCCTCTGCACGCTGGTGACACAAGCTTCATGAGCAAGAACTCAATGGGAAAGAGCAACTTCTTCTCCTCGTCGATGGGATTAGGCCGGTACTTCTCCTTCGCGGAACTTCAGGAAGCAACCAAGAACTTTGACTCCAAGAACATCATTGGTGTTGGTGGATTTGGCAATGTGTATTTGGGTGTGATTGATGAGGGGACTCAAGTGGCAGTCAAGAGAGGAAACCCTCAATCAGAACAAGGCATCACAGAGTTCCAAACTGAAATTCAAATGCTGTCTAAGCTCAGGCACAGGCACTTGGTGTCCTTGATTGGATACTGTGATGAGAATGATGAGATGATCCTGGTTTATGAGTACATGCCTAATGGCCACTTCAGAGACCATCTTTATGGAAAGAACTTACCTGCTCTCTCATGGAAGCAAAGACTAGATATCTGTATTGGATCAGCTCGCGGTCTTCACTACCTTCACACCGGCACAGCTCAAGGCATCATTCACCGCGATGTCAAGACCACCAACATCTTGCTTGATGAGAATTTCACAGCCAAGGTTTCTGATTTTGGTCTTTCAAAGGATGCACCAATGGGGCAGGGTCATGTTAGCACTGCTGTGAAGGGTAGCTTTGGTTACCTTGACCCTGAGTACTTCAGGAGGCAGCAACTGACTGAAAAGTCTGATGTGTACTCATTTGGGGTGGTTCTGCTTGAGGCACTCTGTGCAAGACCAGCCATCAACCCTCAGTTGCCCCGCGAACAAGTAAACTTGGCTGATTGGGCGATGCAATGGAAGAGGAAGGGCCTTCTTGACAAGATCATTGACCCTCTCCTAGTTGGTTGCATCAATCCTGAATCCATGAAGAAGTTTGCTGAGGCTGCTGAGAAGTGTTTGGCAGATCATGGTGTGGATAGGCCTTCAATGGGAGATGTTTTGTGGAACTTGGAGTATGCTTTGCAGCTTCAAGAGGCCTTCACACAAGGAAAGGCTGAGGATGAGACTAAGTCATCATCAGCAGTCCCTACTGCAGCTGTTCCTACTTCACCTGCCCCACCAACACCTCCCATTTCTTCTGATGACCGCCCGGCTCCGGCTGCGCCTGCTCGTCCGGAAGTGAATAATAATACTTCATCGGATGTGCATTCCATTGATGACCATTCTGGAACTGCAATGTTTGCTCAGTTTAGCAATCTCAATGGCAGGTGA 2652 0.4642 MGKIEKNKNTLLTSPFLSSFKSSSSSSSSSSSLMMATLLVILLALFSPSLGLPLASFQPKDNFLIDCGAENTVTLPDGRQFKSDPQARSFLQANDEYKVSANDVNFPSPIYSNARIFIQEAKYSFHLVQPGFHWIRLYFYPIKNNIFDLQKASFSVYTDTYVLLHSFNVNNTDKPIFKEYLINATEPQFTMSFIPLKNSAAFINAIEVVSAPDNLIFDTGAGLFPVGEFSGLTTYGFQPVYRVNNGGPLITSSNDTLGRTWETDEPYLTNKNLAKSASVATSAVKFPQDNPSISPMIAPQTVYASATEMGDAGVNQPNFNVSWKFDVDTSFSYLVRLHFCDIVSKGLNELYFNVYVNGKVAINNLDLSAITGALSTPYYKDIVVNATLMSEGLTVQVGPANADGGNANAIVNGIEVLKMSSSVNSLDGEFGVDGRSVNGSNRGTVAAVGFAMMFGAFVGLGAMVIKWHKRPQDWQKRNSFSSWLLPLHAGDTSFMSKNSMGKSNFFSSSMGLGRYFSFAELQEATKNFDSKNIIGVGGFGNVYLGVIDEGTQVAVKRGNPQSEQGITEFQTEIQMLSKLRHRHLVSLIGYCDENDEMILVYEYMPNGHFRDHLYGKNLPALSWKQRLDICIGSARGLHYLHTGTAQGIIHRDVKTTNILLDENFTAKVSDFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPQLPREQVNLADWAMQWKRKGLLDKIIDPLLVGCINPESMKKFAEAAEKCLADHGVDRPSMGDVLWNLEYALQLQEAFTQGKAEDETKSSSAVPTAAVPTSPAPPTPPISSDDRPAPAAPARPEVNNNTSSDVHSIDDHSGTAMFAQFSNLNGR* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1987 883 SUPERFAMILY Protein kinase-like (PK-like) 511 795 IPR011009 -
Gso12g1987 883 ProSiteProfiles Protein kinase domain profile. 528 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1987 883 MobiDBLite consensus disorder prediction 827 843 - -
Gso12g1987 883 Gene3D Transferase(Phosphotransferase) domain 1 604 824 - -
Gso12g1987 883 MobiDBLite consensus disorder prediction 810 870 - -
Gso12g1987 883 Pfam Protein tyrosine and serine/threonine kinase 531 726 IPR001245 GO:0004672|GO:0006468
Gso12g1987 883 Gene3D Phosphorylase Kinase; domain 1 490 603 - -
Gso12g1987 883 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672|GO:0006468
Gso12g1987 883 CDD STKc_IRAK 534 798 - -
Gso12g1987 883 Gene3D - 62 212 - -
Gso12g1987 883 Gene3D - 238 421 - -
Gso12g1987 883 ProSitePatterns Protein kinases ATP-binding region signature. 534 556 IPR017441 GO:0005524
Gso12g1987 883 Pfam Malectin-like domain 65 418 IPR024788 -
Gso12g1987 883 PANTHER OS07G0166700 PROTEIN 47 844 IPR045272 GO:0004714|GO:0006468
Gso12g1987 883 MobiDBLite consensus disorder prediction 852 870 - -
Gso12g1987 883 PANTHER BNAC03G60370D PROTEIN 47 844 - -
Gso12g1987 883 SMART serkin_6 528 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1987 Gso-Chr12 43937639 43940871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1987 57 883 Receptor kinase-like Gene Family AT4G39110 68.263 0.0 1189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Gso12g1987 Malectin_like 3.8e-37 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1987 - - gmx:100790759 1669.83