Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1972 ATGGTTGGATTCCAGAGTGACCATATGCCTGGGAACAAGTGCAATGGTAATTCTAATAGTTTTCCGGTTCCGGATCGTCATGAACGACTTATGAGAGGAAGAGAGCTAAGAAAAAGCAGCAGGGCATCTCCTGATAGTAATAGTATTAGTAATGTGGGTAGTGAAATTTTTGAGCATGACCTGCGCTTAAGAGAAGATAATAACTCTGCTGCTCCCATTGTTGAACGATACCTGGAAGGAGTGGCAGCAGCTGCAGCAGCAGCTCGGGGAGAAAGGAAAGATGGGAGACCTTTCAGACAACGGCTTTTGGTGGTGGCCAACAGGCTGCCAGTCTCAGCAATTAGGAAAGGCGAGGATTCGTGGTCTTTGGAGATAAGTGCTGGTGGCCTGGTCAGCGCTCTCTTAGGTGTGAAGGAGTTTGAGGCGAGATGGATAGGTTGGGCTGGTGTCAATGTGCCAGATGAGATTGGACAAAAGGCACTTACAAAAGCTTTGGCTGAAAAGAGGTGTATCCCAGTATTTCTTGATGAAGAGATTGTGCATCAATATTACAATGGCTATTGCAATAACATTCTGTGGCCCCTTTTTCATTACCTTGGACTTCCACAAGAAGACCGCCTTGCTACCACACGGAGTTTCCAATCTCAGTTTGAAGCATATCAGAAAGCAAATCAAATGTTTGCTGATGTTGTAAATAAGCACTATGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCACAATGCTTAAAGAATTATAACCACAAAATGAAAGTTGGCTGGTTTCTGCATACCCCATTTCCATCTTCTGAAATTCACAGGACATTGCCATCTCGCTCAGAACTCTTGCATGCTGTTCTTGCAGCTGATTTGGTTGGTTTTCACACGTACGATTATGCACGGCATTTTGTCAGTGCATGTACACGCATTCTTGGACTTGAGGGCACACCTGAAGGGGTTGAGAATCAGGGGAAGCTGACTCGAGTTGCAGCATTTCCAATAGGTATAGACTCAGAACGATTCATACGTGCACTTGACCTTCCTCAAGTCAAGGATCACATCAAAAAATTACAAGAGAGATTTAATGGAAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATTAAAGGAATCCCTCAAAAAATTCTAGCATTTGAAAAATTTTTGGAAGAAAATCCTGGTTGGCATGATAAAGTTGTTCTGCTTCAAATTGCCGTGCCGACAAGAACAGATGTTCCTGAGTATCAAAAGCTTACTAGCCAGGTCCATGAAATTGTTGGTCGCATCAATGGCAGATTTGGAACACTGACTGCTGTTCCCATACATCACCTGGATCGCTCTCTTGATTTTCATGCACTGTGTGCTTTGTATGCTATTACCGATGTAGCACTTGTCACATCTTTGAGGGATGGAATGAATCTTGTAAGTTACGAATTTGTGGCCTGTCAAGATAAAAAGAAAGGGGTTCTCATTCTCAGTGAATTTGCTGGTGCTGCACAGTCACTTGGTGCTGGGGCTATTCTTGTTAACCCTTGGAACATCACAGAAGTTGCTACTGCAATTTCCAAGGCTCTGAATATGCCATCGGCAGAACGCGAGAAGAGACATAAGCATAACTATGAACATGTAAAAACTCACACTGCTCAGGAATGGGCAGAAACTTTTGTAAGTGAACTAAATGATACTGTTGTCGAGGCACAGATAAGGACAAATCAAGTTCCACCACGGCTCCCAACAGAGACTGCAGTTGAATGTTATTTGCAGTCAAATAATCGGTTGCTTATTTTGGGTTTCAATGGAACCTTAACTGAGCCAATTGAGAGAGAAGGTGATCGGTTTAAAGAAAGGGAACTCACAGTGCATCCAGAGCTGAAACAGCCCTTGGCCGAACTTTGCAGTGACCCAAAGACCACAGTTGTTGTGCTTAGTGGAAGTTGTAGAACAGTTCTAGATGAAAACTTTAAAGAATATGACATCTGGCTGGCAGCAGAGAATGGGATGTTTCTAAACCCTTCAAAGGGAGAATGGATGACAACAATGCCTGAGCAACTGAATATGGAATGGGTTGACAGTGTGAAGCATGTTTTTGATTACTTCACGGACAGAACACCTCGATCGTATTTTGAAGAAAGGGAAGCTTCACTTGTTTGGAGTTACAGACATGCAGATGTTGAGTTCGGAAGACTGCAAGCAAGGGACATGCTGCAGCATCTCTGGACAGGTCCAATTTCTAATGCATCTGTTGAAGTTGTTCAAGGGAGCCGATCTGTTGAGGTGCGAGCTGCTAATGTTACAAAGGGAGCAGCTATTGACCGCATTCTAGGTGAGATAGTCCACAGTAAATCCATGACAACACCAATTGATTACGTTCTGTGTATAGGACATTTTCTGACAAAGCAGGATGAAGATATATACGCGTTTTTTGAGCCAGAGCTACCACGAAGCAAGGTAACAGAAGGAGTCAAGTTTCCTGTTGAGAGGGTATCGTCATCCCAAAATAAGGGACAACGGCCTGTGTCAAACTCTGAGAAGAAAACAAATAATCATGTCTGCCGCCTGCCACGGCGGCCGGCTCCTGAAAAGATCTCTTGGAATGTGCTTGACCTCAAGAAGGAGAATTACTTCTCGTGCGCTGTTGGACGAACACAGACCAATGCTCGGTATACGCTTGCTTCACCAGATGAAGTTGTTGCATTTCTCAAGGAACTCCATACTTTGTCTCAGAGCTAA 2748 0.4374 MVGFQSDHMPGNKCNGNSNSFPVPDRHERLMRGRELRKSSRASPDSNSISNVGSEIFEHDLRLREDNNSAAPIVERYLEGVAAAAAAARGERKDGRPFRQRLLVVANRLPVSAIRKGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFEAYQKANQMFADVVNKHYEEGDVVWCHDYHLMFLPQCLKNYNHKMKVGWFLHTPFPSSEIHRTLPSRSELLHAVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVENQGKLTRVAAFPIGIDSERFIRALDLPQVKDHIKKLQERFNGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPGWHDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAITDVALVTSLRDGMNLVSYEFVACQDKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVATAISKALNMPSAEREKRHKHNYEHVKTHTAQEWAETFVSELNDTVVEAQIRTNQVPPRLPTETAVECYLQSNNRLLILGFNGTLTEPIEREGDRFKERELTVHPELKQPLAELCSDPKTTVVVLSGSCRTVLDENFKEYDIWLAAENGMFLNPSKGEWMTTMPEQLNMEWVDSVKHVFDYFTDRTPRSYFEEREASLVWSYRHADVEFGRLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAANVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLTKQDEDIYAFFEPELPRSKVTEGVKFPVERVSSSQNKGQRPVSNSEKKTNNHVCRLPRRPAPEKISWNVLDLKKENYFSCAVGRTQTNARYTLASPDEVVAFLKELHTLSQS* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1972 915 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 100 569 - -
Gso12g1972 915 TIGRFAM T6PP: trehalose-phosphatase 597 909 IPR003337 GO:0003824|GO:0005992
Gso12g1972 915 MobiDBLite consensus disorder prediction 832 853 - -
Gso12g1972 915 Gene3D Glycogen Phosphorylase B; 93 347 - -
Gso12g1972 915 Gene3D - 688 768 - -
Gso12g1972 915 MobiDBLite consensus disorder prediction 32 51 - -
Gso12g1972 915 Pfam Glycosyltransferase family 20 101 566 IPR001830 GO:0003824|GO:0005992
Gso12g1972 915 Gene3D - 601 812 IPR023214 -
Gso12g1972 915 Pfam Trehalose-phosphatase 621 841 IPR003337 GO:0003824|GO:0005992
Gso12g1972 915 MobiDBLite consensus disorder prediction 1 26 - -
Gso12g1972 915 CDD GT20_TPS 101 566 IPR001830 GO:0003824|GO:0005992
Gso12g1972 915 MobiDBLite consensus disorder prediction 832 857 - -
Gso12g1972 915 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 26 909 IPR001830 GO:0003824|GO:0005992
Gso12g1972 915 SUPERFAMILY HAD-like 598 910 IPR036412 -
Gso12g1972 915 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 101 566 IPR012766 GO:0003825|GO:0005992
Gso12g1972 915 CDD HAD_TPP 599 826 - -
Gso12g1972 915 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 26 909 - -
Gso12g1972 915 Gene3D Glycogen Phosphorylase B; 348 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1972 Gso-Chr12 43813703 43835789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1972 9 915 Trehalose Biosynthesis Gene Families AT1G78580 75.450 0.0 1440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1972 K16055 - gmx:100820010 1845.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1972 12 43813703 43835789 Gso15g1749 15 32830876 32865781 GST