Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1970 ATGAACCTCGTGGCCGCAAAAAATATCCTTCATTTTTTTCTTCTTTCTCTTCTCCGCCACTTCTTAAACCCTGCTCCTCTGCTTCGTGGTGCCCCAAACCTCTTCTTCTCTTTCTTTTCCCTCTCTCAATTCCAAACAGTAGAATTAGACACCCTTTTGGAAAAGGAAGTGTTTTTTGAGGGAAAGGAGGGAATTTTTTGTGTGGGAGGGTGGAACCCGGAATTCGGTTTGGTTGGGGTAGAGAGGATGAAGATTCAGTGTAACGTGTGTGAGGCTGCGGAGGCCAAGGTTCTTTGTTGTGCTGATGAGGCTGGGCTGTGTTGGGAGTGTGATGAGAAGGTTCATGCGGCTAACAAGCTTGCCAGCAAGCACCAGAGAGTGCCTCTTTCTACCTCTTCCTCTCATATGCCTAAATGTGACATTTGTCAGGAAGCATTAGGCTATTTTTTCTGTCTAGAAGATCGGGCTCTGCTCTGCAGAAAATGTGATGTGGCAATACACACTGCAAATGCTTATGTCTCTGGTCATCAGAGGTTTCTTCTAACTGGTGTAAGAGTAGGCCTTGAAGCTACAGACCCTGGTGCTTCCTCAACTTCTTTGAAGTCAGATTCTGGGGAGAAAGTTTCAGATTCTTCTGTCTCTAGAAAGGTTTCCACAGCGCCCCAGCCATCAAATTATAATGAAGTGTTACCCGCTGAAGTTGGAGGAGTTGGGGAGTTTCCATCAGCCAAGGTGTCCTTTGGTGGTGGTTCCACAGCTGGAAATATCTCACAGTGGACTATTGATGAATTTATTGGCTTAAACGAGTTCAGTCAGAATTATGATTACATGGAAGGATCGTCAAGGGCTGACGGTGGTAAGCTTGGGGATTCTGATTCTCCTGTTTTAAGATCTGGTGAAGAGGAAATGGAGGAGGAGGATGACTATTTGGAACGCGTTCCAGATTCGTCGTGGACAGTCCCGCAGATCCCTTCCCCACCTACTTCTTCTGGGTTATGCTGGCCAAAAGACCATACTAATCTGTATGGTTCATCTGATAGTGTTCTGTTTGTTCCTGACATAAGCTTCTCTCACCTGCAACAATCTCAGATTAGTATTTTTTTGAGACGCCGGAGGCAGCTTTAA 1125 0.4578 MNLVAAKNILHFFLLSLLRHFLNPAPLLRGAPNLFFSFFSLSQFQTVELDTLLEKEVFFEGKEGIFCVGGWNPEFGLVGVERMKIQCNVCEAAEAKVLCCADEAGLCWECDEKVHAANKLASKHQRVPLSTSSSHMPKCDICQEALGYFFCLEDRALLCRKCDVAIHTANAYVSGHQRFLLTGVRVGLEATDPGASSTSLKSDSGEKVSDSSVSRKVSTAPQPSNYNEVLPAEVGGVGEFPSAKVSFGGGSTAGNISQWTIDEFIGLNEFSQNYDYMEGSSRADGGKLGDSDSPVLRSGEEEMEEEDDYLERVPDSSWTVPQIPSPPTSSGLCWPKDHTNLYGSSDSVLFVPDISFSHLQQSQISIFLRRRRQL* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1970 374 MobiDBLite consensus disorder prediction 318 332 - -
Gso12g1970 374 ProSiteProfiles Zinc finger B-box type profile. 82 129 IPR000315 GO:0008270
Gso12g1970 374 PANTHER B-BOX ZINC FINGER PROTEIN 18 83 373 - -
Gso12g1970 374 Pfam B-box zinc finger 136 177 IPR000315 GO:0008270
Gso12g1970 374 Gene3D Classic Zinc Finger 83 174 - -
Gso12g1970 374 CDD Bbox1_BBX-like 138 181 - -
Gso12g1970 374 MobiDBLite consensus disorder prediction 192 226 - -
Gso12g1970 374 PANTHER B-BOX ZINC FINGER PROTEIN 22 83 373 - -
Gso12g1970 374 CDD Bbox1_BBX-like 87 129 - -
Gso12g1970 374 MobiDBLite consensus disorder prediction 192 228 - -
Gso12g1970 374 SMART bboxneu5 82 129 IPR000315 GO:0008270
Gso12g1970 374 SMART bboxneu5 134 181 IPR000315 GO:0008270
Gso12g1970 374 MobiDBLite consensus disorder prediction 278 332 - -
Gso12g1970 374 ProSiteProfiles Zinc finger B-box type profile. 134 181 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1970 Gso-Chr12 43780560 43784310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1970 83 374 C2C2-CO-like Transcription Factor Family AT1G78600 48.193 6.68e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso12g1970 zf-B_box 7.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1970 - - gmx:100819131 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1970 12 43780560 43784310 Gso11g2868 11 44412861 44417140 GST