Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1965 ATGAACATGACTTCCTCTCCACATCTCCATCTTTGGTTTCTTGCCTTTTGTTTGATCTCTTCTTTGGCTAGGGGAGCTACTCTGCCAGAAGATGAAGTGCAAGTTATGAAAGATATAGGTAGGACACTTGGGAAGAAGAATTGGGATTTCAGTGTGGATCCATGCAGTGGGCAAAGTAATTGGACTTCATTTGTTCAAGTGAAGGGATTTGAAAATGCTGTCACCTGCATTTGCCTTGCAAATGCCAGTATCTGCCATGTTGTTAGCATTGTTCTTAAGTCACAAAATCTTTCGGGCACACTCCCAACTGAGCTGGTGAGATTGCCTTACCTCCAAGAAATTGACCTCTCCCGCAACTACCTTAATGGTACCATCCCTTCGCAATGGGGCTCCATGAATCTTGTCAACATTTCCATTCTTGGAAATCGGCTAACAGGTTCAATCCCAAAAGAATTAGGAAACATCACCACACTGAAAAGTTTGGTGCTAGAGTTCAATCAATTATCTGGAGTACTTCCTCCTGAGCTGGGGAATCTCCCCCGACTTGAAAGACTGCTTCTTACATCCAACTATTTTACCGGAAATTTACCTGCAACATTTTCCAGGCTCACTAGACTAAAGCAACTTCGACTTGGCGACAATCAATTCTCTGGAACTTTACCCAATTTCATGCAAAGTTGGACAAGTTTAGAGAGACTGGTGATGCAAGGGAGTGGTTTTAGTGGACCAATTCCTTCTGGAATTTCATTCCTAAACAACCTCACTGACTTGAGAATTAGTGACTTGAAAGGACCGGATTCTCTATTTCCCCAGCTTAAAAACTTGACAAGTTTGCAAACACTAGTATTGAGGAGTTGCAATCTTGTAGGAATGGCTCCTGAATATCTTGGAAATGTGACTACTTTACGATCATTAGATCTCAGTTTTAACAAATTAACTGGATCAATTCCGAGAACCTTGGGTGGCCTGAACGATATAAATTTACTATACTTAACTGGAAACCTATTTACTGGACCACTGCCCAATTGGATAGATAGGCCAGACTACACGGATCTTTCATATAACAATTTAACGATCGAAAACCCTGAGCAATTGACATGTCAACAAGGAAGCGTGAACTTGTTTGCATCATCTTTGAAGGGAAAGAACTTGGGAATGATTCCATGTTTAGGAAACAGTAACTGTCCTAAAACTTGGTACTCTCTTCATATAAACTGTGGTGGAAAGTTAATTTCTAATGGAAACATGAAATATGATGATGATTCACAAGAAGCTGGACCAGCAAGATTTCGCCGAACCGGATCAAATTGGGTATTTAGCAACACTGGTCATTTCTTTGATAGCAGTCGTTTAGACTACTATACCTGGTCTAATACAACTAAGCTTGCTATGGACAATGGTGAACTATATATGGATGCACGTGTTTCTGCCCTTTCTCTCACGTATTATGCATTTTGCATGGGAAATGGAAGCTACACAGTAAGTCTTCATTTTGCAGAAATTATGTTCACTGATGATCAAACGTATAGCAGCCTCGGAAGACGTGTATTTGACATCTATATTCAGAGAAAGTTGGTGGTGAAGGATTTTAATATTGCAAAAGAAGCCGGAGGAGTTGGTAAGGCAATCATAAAAAAGTTCAATGTTACTGTTAATATCAGTACCTTAGAGATTCGCTTGCAATGGGCCGGTAAAGGAACAACCGGTATCCCATTTGGATCAGTTCATGGTCCTCTTATATCAGCTATATCTGTTGACCCTGACTTTACACCTCGAGAAGAAAATAGAGATGGCACGCCTGTGCAGTTTATTGTTGCAATTGTAGTTACTGGAGCACTTGTTATCATCATAATATTTGGTATAGCTTGGTGGAAAGGATGTCTAGGACGGAAAGGTTCATTAGAAAGAGAATTAAGAGGTGTAGATTTGCAAACTGGCTTATTTAGCTTACGACAAATGAAAGCTGCTACTAACAACTTTGATATTGCCTTCAAGATTGGAGAAGGAGGATTTGGTCCTGTGTACAAGGGTGTTCTCTCAGATGGTAAAGTAATAGCAGTTAAACAACTTTCTTCAAAATCAAAGCAAGGGAATCGTGAGTTTATAAACGAGGTTGGCATGATTTCTGCTTTGCAACACCCTTGTTTAGTTAAGCTCTATGGTTGTTGTATGGAGGGAGACCAATTGATGTTGATATATGAATACATGGAAAACAACAGTCTTGCTCGTGCTTTATTTGCACAAGAAAAATGTCAATTGAAGTTGGATTGGTCAACAAGGCAGAGAATTTGTGTTGGTATTGCTAAAGGTTTGGCTTACCTCCATGGAGAGTCAAGACTGAAGATAGTTCACAGGGACATCAAGGCCACTAATGTGCTACTTGATAAAAATCTCAATCCAAAGATATCTGATTTTGGTTTGGCCAAGCTGGATGAAGAGGGCTATACACACATAACTACCAGAATAGCGGGCACCTACGGATACATGGCTCCTGAATACGCAATGCATGGTTATTTAACTGACAAAGCAGATGTTTATAGTTTTGGCATTGTTGCTTTGGAAATTATTAGTGGAAAAAGTAACTCCATGAATTGGACAAAGGAAGGGTGCTTCTCCCTTGTTGATTGGGTGCATCTCTTGAAAGAACAAGGTAATATAATAGACCTGGTAGATGAGAGGTTGGGTAAAGATTTCAAAAAAGGTGAAGTAATGGTCATGATCAATGTGGCTCTACTATGCACACAAGTGTCTCCAACGAATAGACCCTCCATGGCTTCAGTGGTATGCATGCTTGAAGGCAAAACTGAAGTTCAAGAAGTAGTGTCGGTCGCAAGCCATCTATTAGATGGAGAGAAGTTGGAGATGATCCAACAGTATTACCATATGAGAGAAAAAAATAAGACCAATGAGACTCAAGAAGAGAGCATTTCAATGGGTGAAACTTCAGCATTTATGTCTGACACAGATCTGTATTCAATCAATATGGACTCTTCTTACCAGGAAAAAAGTGATTAG 3015 0.3997 MNMTSSPHLHLWFLAFCLISSLARGATLPEDEVQVMKDIGRTLGKKNWDFSVDPCSGQSNWTSFVQVKGFENAVTCICLANASICHVVSIVLKSQNLSGTLPTELVRLPYLQEIDLSRNYLNGTIPSQWGSMNLVNISILGNRLTGSIPKELGNITTLKSLVLEFNQLSGVLPPELGNLPRLERLLLTSNYFTGNLPATFSRLTRLKQLRLGDNQFSGTLPNFMQSWTSLERLVMQGSGFSGPIPSGISFLNNLTDLRISDLKGPDSLFPQLKNLTSLQTLVLRSCNLVGMAPEYLGNVTTLRSLDLSFNKLTGSIPRTLGGLNDINLLYLTGNLFTGPLPNWIDRPDYTDLSYNNLTIENPEQLTCQQGSVNLFASSLKGKNLGMIPCLGNSNCPKTWYSLHINCGGKLISNGNMKYDDDSQEAGPARFRRTGSNWVFSNTGHFFDSSRLDYYTWSNTTKLAMDNGELYMDARVSALSLTYYAFCMGNGSYTVSLHFAEIMFTDDQTYSSLGRRVFDIYIQRKLVVKDFNIAKEAGGVGKAIIKKFNVTVNISTLEIRLQWAGKGTTGIPFGSVHGPLISAISVDPDFTPREENRDGTPVQFIVAIVVTGALVIIIIFGIAWWKGCLGRKGSLERELRGVDLQTGLFSLRQMKAATNNFDIAFKIGEGGFGPVYKGVLSDGKVIAVKQLSSKSKQGNREFINEVGMISALQHPCLVKLYGCCMEGDQLMLIYEYMENNSLARALFAQEKCQLKLDWSTRQRICVGIAKGLAYLHGESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLDEEGYTHITTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIISGKSNSMNWTKEGCFSLVDWVHLLKEQGNIIDLVDERLGKDFKKGEVMVMINVALLCTQVSPTNRPSMASVVCMLEGKTEVQEVVSVASHLLDGEKLEMIQQYYHMREKNKTNETQEESISMGETSAFMSDTDLYSINMDSSYQEKSD* 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1965 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Gso12g1965 1004 Gene3D Ribonuclease Inhibitor 191 264 IPR032675 -
Gso12g1965 1004 Gene3D Transferase(Phosphotransferase) domain 1 736 948 - -
Gso12g1965 1004 Pfam Leucine rich repeat 277 335 IPR001611 GO:0005515
Gso12g1965 1004 Pfam Malectin domain 401 583 IPR021720 -
Gso12g1965 1004 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 379 978 - -
Gso12g1965 1004 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 288 342 - -
Gso12g1965 1004 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 74 291 - -
Gso12g1965 1004 SUPERFAMILY Protein kinase-like (PK-like) 646 932 IPR011009 -
Gso12g1965 1004 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 74 291 - -
Gso12g1965 1004 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 288 342 - -
Gso12g1965 1004 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 379 978 - -
Gso12g1965 1004 SMART serkin_6 660 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1965 1004 Gene3D - 399 587 - -
Gso12g1965 1004 Pfam Protein tyrosine and serine/threonine kinase 665 929 IPR001245 GO:0004672|GO:0006468
Gso12g1965 1004 ProSiteProfiles Protein kinase domain profile. 660 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1965 1004 Gene3D Ribonuclease Inhibitor 265 383 IPR032675 -
Gso12g1965 1004 SUPERFAMILY L domain-like 78 358 - -
Gso12g1965 1004 Gene3D Phosphorylase Kinase; domain 1 631 735 - -
Gso12g1965 1004 Gene3D Ribonuclease Inhibitor 42 190 IPR032675 -
Gso12g1965 1004 CDD STKc_IRAK 666 933 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1965 Gso-Chr12 43696896 43709826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1965 19 987 Receptor kinase-like Gene Family AT1G53420 53.531 0.0 1011
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1965 PK_Tyr_Ser-Thr 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1965 - - gmx:100786496 1994.55