Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1964 ATGAAGAAGGTCACTTCCTCTCAATTTCTCCTCCTTCAACTCCTTGCCTTATGGTTCACATCACTTGCTTTTGGAGCCAATACCACTCAGCCAGAAGAAGTGCAAGCTCTGAAAGATATGGGCAAGATCCTTGGTAAGAAGGAATGGGACACTGATATAGACCCATGTTCAAGCCAACATCCCTGGTTCACACCTAAGGTGGACACCGTAGAGAACAATGTCACTTGCAATTGCTCTATCCCCGGTGACAACTTCTGCCATGTTGTTTCAATATTGCTGAAATCACAAAATCTTCCAGGCAAGCTCCCACCCGAACTGATAAGGTTGCCTTACCTCGAAGAAATCGACCTCACTCGCAACTACCTTAACGGTACAATACCTACCGAATGGGGCTCCTCCAATCTTCGCAAAATTTCTCTTCTTGGAAATCGCTTAACTGGTCCAATCCCAAAAGAGATAGGAAACATCACCACGCTCGAAAGTTTGGTCTTGGAATTCAATCAATTTTCTGAAAATCTACCTCCAGAACTTGGGAACCTTTCTAGCATTCAAAGATTGCATCTTACGTCTAACAACTTTACCGGAGAGTTGCCTGAAACTTTGGCGAAACTTACAACATTGACAGAACTCCGGCTTAGTGACAATAATTTCTCTGGAAAGATACCCGATTTTATTCACAGATGGACAAATCTTGTTTTACTATCAATTCAAGGGAGTGGTTTAAGTGGGCCTATTCATTCTGGAATTTCATTTCTGCAAAACTTAACAGACTTGAGAATCAGTGACTTGAATGGATCTGATTCTACTTTTCCACCGATTAATAATATGACAAAATTGCAAACGCTGATACTAAGGAGTTGCAATATTAATGACACCTTACCTCCATATCTTGGGAACATGAAAAGCATTCAAGATTTGAGAACTTTAGACCTAAGCTTTAACAAATTAAGCGGACAGATTCTGGAAACCTATAAAAATCTTTCAAGCCTGACCTACATATATTTTACTGAAAACTTGTTTACTGGACCTGTACCCAACTGGATAGAAGATGCTGGTAAATACATTGATCTTTCATATAACAACTTCAGCAATGAAACCCTCCCGCAACAAACATGCCCACAGGCTCAACACACCGGAACAGAAGTGAACTTGTTTGCAAGCTTTCCAATGAGCCAAAATGGACCTCTTCCCTGTCGTCCGATGGCAAACAAATATGCATGTTCTAGAATCTTAAACTCTCTCCATATAAACTGTGGTGGTGCAAGAGAGACAAGCAGTGAAGGTATAATATATGATGGCGATTCAGATTCATTAGGACCATCAACATCTAAAGAGGTGGGAGAAAACTGGGCAATTAGCAACACTGGTCACTTCTTGAATAGCAATGCCTCAGAAACCTATATCCAACAAAATACAACTAGGCTTTCTATGCCCGATAATGCCTTGTATAAGACCGCGCGTGTGTCCCCCATTTCTCTCACTTACTATGGATTTTGTCTGGAAAATGGAGACTACACTGTCACGCTCCATTTTGCAGAGATAGCTTTCACTGATGATGATACATATAAGAGCCTAGGGAGGCGTATATTTGATATTTACATTCAGAGAAAACTGGTATGGAAGGATTTCAATATTGCATATGAAGCAGGAGGAGTTGGAAAGGAAATTAAAATACCATTTCCTGCTTATGTGAATAATAACTCTTTAGAGATTCGCTTTTATTGGGCTGGGAAAGGGACAGATGGTATCCCATATAAATCAATATATGGTCCTCTTATATCAGCTATATCTGTCACTCGTGACTCTACAGGTGGCAGCATGTCTGCAGGGGTTGTAGTTGGAATAGTAGTTGCTGCAATTGTTCTTGTCATCCTAATTGTACTTTGCTGGAGAATTTATATTAGGAAAAGAAATTCATTAGCAAAAGAGTTACAGGATTTAAATCTGCAAACGAGTTTATTTACTATGCACCAAATCAAAGTTGCAACTAACAACTTTGATATTTCCAACAAGATTGGAGAAGGAGGCTTTGGTCCTGTTTATAAGGGCATTTTATCAAATGGCACGATAATAGCTGTCAAGATGCTTTCATCTAGGTCAAAGCAAGGAAATCGTGAGTTTATAAATGAGATAGGCTTGATTTCAGCCTTGCAGCACCCTTGTCTTGTTAAACTTTATGGTTGTTGCGTTGAAGGAGATCAATTGTTGTTAGTATACGAATATATGGAAAACAATAGCCTTGCACAAGCTTTATTTGGTAGTGGAGAATCTCGATTAAAATTGGATTGGCCAACAAGACACAAGATCTGCCTTGGTATTGCTAGAGGTTTGGCTTTCTTACATGAAGAATCAAGATTAAAAATTGTTCACAGGGACATTAAGGCCACTAATGTGTTACTAGACAAAGACTTAAATCCAAAAATATCTGATTTTGGTCTAGCCAAGCTCGATGAGGAGGACAATACTCATATAAGCACAAGAATAGCTGGGACTTATGGATATATGGCTCCAGAATATGCAATGCATGGTTATTTGACAGACAAAGCAGATGTGTATAGTTTTGGAGTGGTTGCCTTGGAAATTGTATCTGGAAAGAGCAATACCATCCACCGACCCAAGCAAGAAGCATTGCATCTTCTAGATTGGGCACATTTATTGAAAGAGAAAGGTAACCTAATGGAGCTAGTTGATAGAAGGTTAGGTTCAAATTTAAATGAAAATGAGGTAATGATGATGATCAAAGTGGCTCTCCTATGCACCAATGCCACTTCAAACCTTAGGCCCACCATGTCATCGGTGCTTAGTATACTAGAAGGAAGAACTATGATTCCAGAATTTATTTCAGATCCATCTGAGATAATGGATGAAATGAAGTTAGAGGCAATGCGACAATATTACTTTCAAATAGAAGAAAATGAGAGAAACGAGACACAAACAGAAAGTCATAGTTTATCAATTGATGGGTCATGGATGGCTTCATCTTCATCAGCTGCAGATCTATATCCTGTCCACGTTGATTCTTCCTATTGGGAGAAAAGAAATTAG 3045 0.3928 MKKVTSSQFLLLQLLALWFTSLAFGANTTQPEEVQALKDMGKILGKKEWDTDIDPCSSQHPWFTPKVDTVENNVTCNCSIPGDNFCHVVSILLKSQNLPGKLPPELIRLPYLEEIDLTRNYLNGTIPTEWGSSNLRKISLLGNRLTGPIPKEIGNITTLESLVLEFNQFSENLPPELGNLSSIQRLHLTSNNFTGELPETLAKLTTLTELRLSDNNFSGKIPDFIHRWTNLVLLSIQGSGLSGPIHSGISFLQNLTDLRISDLNGSDSTFPPINNMTKLQTLILRSCNINDTLPPYLGNMKSIQDLRTLDLSFNKLSGQILETYKNLSSLTYIYFTENLFTGPVPNWIEDAGKYIDLSYNNFSNETLPQQTCPQAQHTGTEVNLFASFPMSQNGPLPCRPMANKYACSRILNSLHINCGGARETSSEGIIYDGDSDSLGPSTSKEVGENWAISNTGHFLNSNASETYIQQNTTRLSMPDNALYKTARVSPISLTYYGFCLENGDYTVTLHFAEIAFTDDDTYKSLGRRIFDIYIQRKLVWKDFNIAYEAGGVGKEIKIPFPAYVNNNSLEIRFYWAGKGTDGIPYKSIYGPLISAISVTRDSTGGSMSAGVVVGIVVAAIVLVILIVLCWRIYIRKRNSLAKELQDLNLQTSLFTMHQIKVATNNFDISNKIGEGGFGPVYKGILSNGTIIAVKMLSSRSKQGNREFINEIGLISALQHPCLVKLYGCCVEGDQLLLVYEYMENNSLAQALFGSGESRLKLDWPTRHKICLGIARGLAFLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGVVALEIVSGKSNTIHRPKQEALHLLDWAHLLKEKGNLMELVDRRLGSNLNENEVMMMIKVALLCTNATSNLRPTMSSVLSILEGRTMIPEFISDPSEIMDEMKLEAMRQYYFQIEENERNETQTESHSLSIDGSWMASSSSAADLYPVHVDSSYWEKRN* 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1964 1014 Pfam Malectin domain 413 596 IPR021720 -
Gso12g1964 1014 SUPERFAMILY Protein kinase-like (PK-like) 650 956 IPR011009 -
Gso12g1964 1014 ProSiteProfiles Protein kinase domain profile. 666 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1964 1014 Pfam Leucine Rich repeat 305 321 IPR001611 GO:0005515
Gso12g1964 1014 Pfam Leucine Rich repeat 204 219 IPR001611 GO:0005515
Gso12g1964 1014 Gene3D Ribonuclease Inhibitor 229 393 IPR032675 -
Gso12g1964 1014 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 76 293 - -
Gso12g1964 1014 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 398 979 - -
Gso12g1964 1014 SUPERFAMILY L domain-like 83 363 - -
Gso12g1964 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672|GO:0006468
Gso12g1964 1014 Gene3D Phosphorylase Kinase; domain 1 630 741 - -
Gso12g1964 1014 Pfam Protein tyrosine and serine/threonine kinase 668 935 IPR001245 GO:0004672|GO:0006468
Gso12g1964 1014 SMART serkin_6 666 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1964 1014 Gene3D Ribonuclease Inhibitor 34 157 IPR032675 -
Gso12g1964 1014 Gene3D Ribonuclease Inhibitor 158 228 IPR032675 -
Gso12g1964 1014 CDD STKc_IRAK 672 939 - -
Gso12g1964 1014 Gene3D Transferase(Phosphotransferase) domain 1 742 947 - -
Gso12g1964 1014 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 76 293 - -
Gso12g1964 1014 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 398 979 - -
Gso12g1964 1014 Gene3D - 412 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1964 Gso-Chr12 43678706 43692382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1964 24 969 Receptor kinase-like Gene Family AT1G53420 54.413 0.0 968
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1964 PK_Tyr_Ser-Thr 4.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1964 - - gmx:100785451 1920.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1964 12 43678706 43692382 Gso11g2875 11 44461984 44477343 GST