Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1963 ATGATGCGGTTTGTGATGTCTTCAAGCTCCAAACGTGTGTCTAAGTGCTTCATTTTTTTGTTCCTGGCTTCCCTACACTTTGGATCCAACGCTCAACTCTTACCACAAGATGAAGTGAAATTGCTACAAGCAATATCAGACAAGGTAGAGAACCTGAATTGGAAAGTTACACAACATTCTTGCAACGGGGATAGAGGATTTGATAACAGGAACATTTCAAGGGATAAGTCTCAAATCATAAGGAATGTCACGTGTGATTGCTCTTTCAACAATAACACTACTTGCCATGTGACATCAATTGCGCTCAAGGGTCTCAATATATCTGGACCTATACCCGATGAATTTGGAAATTTAACTCGACTAGAAATACTTGATCTCACTTGGAATAATTTCAATGGCTCAATTCCAAAAAGCCTTGGACGCCTCTCATCAGTTGTCAATCTGTCACTTTTGGGAAATCGACTTACTGGTTCAATTCCCTCAGAAATTGGTGACATGGCTAGTCTGCAAGAACTGAATTTGGAAGATAATCAACTTGAGGGACCTCTTCCCCAGAGCCTTGGAAAAATGAGCAACTTGCTGAGATTACTTCTTTCTGCAAATAATTTCACAGGGATAATACCAGATACATATGGAAATCTAAAGAATCTCACTCAGTTTAGGATAGATGGGAGCAGTTTATCTGGGAAAATACCCAGTTTTATTGGGAACTGGACCAAACTTGATAGATTGGATTTGCAGGGCACATCCTTGGACGGCCCAATTCCTTCTGTCATATCTTACTTGACAAATTTGACAGAATTGAGGATATCTGATTTGAAGGGACCAACTATGACATTTCCTAATCTGAAGAATTTGAAAATTTTGCTAAGACTGGAATTGAGGAATTGCTTAATAACTGGTCCCATTCCAAACTACATTGGAGAAATAAAAAGTTTGAAAACCATAGATCTGAGCTCCAACATGTTAACAGGTTCAATCCCAGATTCATTTCAGGATTTGGGAAATCTAAATTACTTGTTTCTGACTAACAATTCTCTAAGTGGACCAATTCCTGATTGGATACTGAGCATAAAACAGCAAATTGATTTATCTTTGAACAATTTCACAAAGACTTCTGCAAATAATTGCCAAAGGCCGGATCTGAACTTAGCTTCAAGCCTCTCTCGCACAGCAAGCACTTCAATATCTTGTTTGAAGATGGGCCAACCTTGTTCAGGAAAACCCCAGTTTCATTCACTGTTCATAAACTGTGGAGGACCTGAAACAAAGTTTGAGGGCAATGAATATGAAGCTGACCTCAGTCCACTTGGCATTTCAAACTATGTTCCTGGTAATAGTGGCAAATGGGCTTATAGCAGCACTGGAGTATATCTAGGAAATGCAAAAGCTGATTATATAGCAACAAATCAGCTTTCTTTGGATATTAATGGCCCTGATTACTACCACACAGCCCGCATAGCTCCTCTGTATCTTAATTACTATGGCCTTTGTATGCTGAACGGCAATTATAAAGTGAAACTTCATTTTGCTGAGATAGCATTCTCTGATGACCAATCATATTGCAACCTTGGAAAGCGTGTATTCGATGTATCAATTCAAGGTTTTAAATATCTGAAAGATTTTAACATTGCGAAAGAAGCTGGTGGAGTTGGTAAGGGAATCACTAGGGAGTTTAATGTTAATGTTACAGAAAGCACCTTGGAAATCCACTTATCCTGGGCAGGAAAAGGAACTAATGCCATTCCTATAATAGGTGTATATGGACCTCTCATATCTGCTATCACTGTGACCCCAAACTTTAAAGTTTATGCACATGGGTTCTCTACTGGAACAATTGTTGGAATTGTTGCTGGGGCATGTGTGATTGTCATATTGATGCTCTTTGCTCTTTGGAAGATGGGTTTCCTTTGTCAGAAAGATCAAACAGACCAAGAACTTCTAGGTCTGAAAACAGGTTATTTCAGTTTAAGACAAATTAAAGCTGCTACTAATAACTTTGACCCAGCAAATAAGATAGGTGAAGGAGGCTTTGGACCAGTATTCAAGGGTGTACTATCAGATGGTGCTGTGATTGCTGTTAAGCAGCTCTCCTCCAAATCAAAGCAAGGGAATCGTGAATTCATCAATGAAATAGGCATGATATCTGCTTTGCAGCATCCAAACCTTGTGAAACTTTATGGCTGCTGCATTGAAGGAAACCAGCTGCTGCTAGTATATCAGTACATGGAGAACAATAGTCTTGCTCGTGCACTTTTTGGTAAAGAACATGAGAGGATGCAATTGGACTGGCCCAGAAGAATGCAAATTTGTCTGGGTATAGCAAAGGGCTTAGCTTATCTTCATGAGGAATCAAGGTTGAAAATAGTGCACAGGGATATTAAGGCAACCAATGTCTTACTTGATAAACATCTGCATGCCAAGATCTCTGACTTTGGTTTAGCCAAACTTGATGAAGAAGAGAATACTCATATCAGCACAAGAATAGCTGGGACAATTGGTTACATGGCTCCTGAGTATGCTATGAGGGGTTACTTGACTGACAAAGCAGATGTCTATAGCTTTGGAATTGTAGCTTTAGAGATTGTTAGTGGAAAGAGCAACACAAATTATAGGCCAAAGGAGGAGTTTGTATATCTTTTAGATTGGGCCTATGTTCTCCAAGAGCAAGGAAACCTTCTGGAGCTGGTGGATCCAAGTCTTGGTTCAAAGTACTCCTCAGAAGAGGCCATGAGAATGCTGCTGTTAGCACTCTTGTGCACCAATCCTTCTCCCACTCTTAGACCATGTATGTCATCAGTAGTGAGCATGCTTGAGGGAAAAACTCCAATTCAAGCACCAATAATTAAACGCGGTGACAGTGCAGAAGATGTAAGATTTAAAGCCTTTGAGATGCTATCACAAGACAGTCAAACTCATGTCTCTTCTGCATTCTCAGAAGAAAGTATAGAGCAAAGAAGCAAATCAATGGGGGAACCATGGCTTGACTCCTCCATATCACTTCCAAGTAGAATTGATTAG 3021 0.3982 MMRFVMSSSSKRVSKCFIFLFLASLHFGSNAQLLPQDEVKLLQAISDKVENLNWKVTQHSCNGDRGFDNRNISRDKSQIIRNVTCDCSFNNNTTCHVTSIALKGLNISGPIPDEFGNLTRLEILDLTWNNFNGSIPKSLGRLSSVVNLSLLGNRLTGSIPSEIGDMASLQELNLEDNQLEGPLPQSLGKMSNLLRLLLSANNFTGIIPDTYGNLKNLTQFRIDGSSLSGKIPSFIGNWTKLDRLDLQGTSLDGPIPSVISYLTNLTELRISDLKGPTMTFPNLKNLKILLRLELRNCLITGPIPNYIGEIKSLKTIDLSSNMLTGSIPDSFQDLGNLNYLFLTNNSLSGPIPDWILSIKQQIDLSLNNFTKTSANNCQRPDLNLASSLSRTASTSISCLKMGQPCSGKPQFHSLFINCGGPETKFEGNEYEADLSPLGISNYVPGNSGKWAYSSTGVYLGNAKADYIATNQLSLDINGPDYYHTARIAPLYLNYYGLCMLNGNYKVKLHFAEIAFSDDQSYCNLGKRVFDVSIQGFKYLKDFNIAKEAGGVGKGITREFNVNVTESTLEIHLSWAGKGTNAIPIIGVYGPLISAITVTPNFKVYAHGFSTGTIVGIVAGACVIVILMLFALWKMGFLCQKDQTDQELLGLKTGYFSLRQIKAATNNFDPANKIGEGGFGPVFKGVLSDGAVIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLVYQYMENNSLARALFGKEHERMQLDWPRRMQICLGIAKGLAYLHEESRLKIVHRDIKATNVLLDKHLHAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSKYSSEEAMRMLLLALLCTNPSPTLRPCMSSVVSMLEGKTPIQAPIIKRGDSAEDVRFKAFEMLSQDSQTHVSSAFSEESIEQRSKSMGEPWLDSSISLPSRID* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1963 1006 SMART LRR_typ_2 190 213 IPR003591 -
Gso12g1963 1006 SMART LRR_typ_2 310 333 IPR003591 -
Gso12g1963 1006 SMART LRR_typ_2 334 358 IPR003591 -
Gso12g1963 1006 SMART LRR_typ_2 166 189 IPR003591 -
Gso12g1963 1006 SMART LRR_typ_2 118 142 IPR003591 -
Gso12g1963 1006 SMART serkin_6 667 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1963 1006 SUPERFAMILY Protein kinase-like (PK-like) 651 939 IPR011009 -
Gso12g1963 1006 Pfam Leucine rich repeat 291 347 IPR001611 GO:0005515
Gso12g1963 1006 Pfam Malectin domain 414 595 IPR021720 -
Gso12g1963 1006 Gene3D - 414 600 - -
Gso12g1963 1006 Gene3D Ribonuclease Inhibitor 210 413 IPR032675 -
Gso12g1963 1006 Pfam Leucine Rich Repeat 120 141 IPR001611 GO:0005515
Gso12g1963 1006 Pfam Leucine Rich Repeat 168 189 IPR001611 GO:0005515
Gso12g1963 1006 MobiDBLite consensus disorder prediction 991 1006 - -
Gso12g1963 1006 Gene3D Ribonuclease Inhibitor 55 209 IPR032675 -
Gso12g1963 1006 Gene3D Phosphorylase Kinase; domain 1 634 742 - -
Gso12g1963 1006 ProSiteProfiles Protein kinase domain profile. 667 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1963 1006 CDD STKc_IRAK 673 940 - -
Gso12g1963 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
Gso12g1963 1006 PANTHER - 385 993 - -
Gso12g1963 1006 PANTHER - 75 299 - -
Gso12g1963 1006 PANTHER - 299 355 - -
Gso12g1963 1006 SUPERFAMILY L domain-like 94 369 - -
Gso12g1963 1006 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 75 299 - -
Gso12g1963 1006 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 385 993 - -
Gso12g1963 1006 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 299 355 - -
Gso12g1963 1006 Pfam Protein tyrosine and serine/threonine kinase 671 890 IPR001245 GO:0004672|GO:0006468
Gso12g1963 1006 Gene3D Transferase(Phosphotransferase) domain 1 743 950 - -
Gso12g1963 1006 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 188 218 IPR000225 GO:0005515
Gso12g1963 1006 MobiDBLite consensus disorder prediction 974 1006 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1963 Gso-Chr12 43660843 43673526 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1963 17 1004 Receptor kinase-like Gene Family AT1G53440 60.020 0.0 1177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1963 PK_Tyr_Ser-Thr 4.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1963 - - gmx:100784920 1939.08